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- PDB-1fxi: STRUCTURE OF THE [2FE-2S] FERREDOXIN I FROM THE BLUE-GREEN ALGA A... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1fxi | ||||||
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Title | STRUCTURE OF THE [2FE-2S] FERREDOXIN I FROM THE BLUE-GREEN ALGA APHANOTHECE SACRUM AT 2.2 ANGSTROMS RESOLUTION | ||||||
![]() | FERREDOXIN I | ||||||
![]() | ELECTRON TRANSFER (IRON-SULFUR PROTEIN) | ||||||
Function / homology | ![]() electron transport chain / 2 iron, 2 sulfur cluster binding / electron transfer activity / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Tsukihara, T. | ||||||
![]() | ![]() Title: Structure of the [2Fe-2S] ferredoxin I from the blue-green alga Aphanothece sacrum at 2.2 A resolution. Authors: Tsukihara, T. / Fukuyama, K. / Mizushima, M. / Harioka, T. / Kusunoki, M. / Katsube, Y. / Hase, T. / Matsubara, H. #1: ![]() Title: Main Chain Fold of a [2Fe-2S] Ferredoxin I from Aphanothece Sacrum at 2.5 Angstroms Resolution Authors: Tsutsui, T. / Tsukihara, T. / Fukuyama, K. / Katsube, Y. / Hase, T. / Matsubara, H. / Nishikawa, Y. / Tanaka, N. #2: ![]() Title: Crystallization and a 5 Angstroms X-Ray Diffraction Study of Aphanothece Sacrum Ferredoxin Authors: Kunita, A. / Koshibe, M. / Nishikawa, Y. / Fukuyama, K. / Tsukihara, T. / Katsube, Y. / Matsuura, Y. / Tanaka, N. / Kakudo, M. / Hase, T. / Matsubara, H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 91.4 KB | Display | ![]() |
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PDB format | ![]() | 64.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 461.8 KB | Display | ![]() |
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Full document | ![]() | 577.2 KB | Display | |
Data in XML | ![]() | 34.9 KB | Display | |
Data in CIF | ![]() | 44.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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4 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 10314.291 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() #2: Chemical | ChemComp-FES / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.45 Å3/Da / Density % sol: 49.81 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 4 ℃ / Method: microdialysis / Details: Kunita, A., (1978) J.Biochem.(Tokyo), 84, 989. | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Num. obs: 21790 / Num. measured all: 42249 |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 2.2→6 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 2.2→6 Å
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Refine LS restraints |
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