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Yorodumi- PDB-229d: DNA ANALOG OF YEAST TRANSFER RNA PHE ANTICODON DOMAIN WITH MODIFI... -
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-Basic information
Entry | Database: PDB / ID: 229d | ||||||||||||||||||
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Title | DNA ANALOG OF YEAST TRANSFER RNA PHE ANTICODON DOMAIN WITH MODIFIED BASES 5-METHYL CYTOSINE AND 1-METHYL GUANINE | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / TRANSFER RNA / ANTICODON / HAIRPIN LOOP | Function / homology | DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR | Authors | Basti, M.M. / Stuart, J.W. / Lam, A.T. / Guenther, R. / Agris, P.F. | Citation | Journal: Nat.Struct.Biol. / Year: 1996 Title: Design, biological activity and NMR-solution structure of a DNA analogue of yeast tRNA(Phe) anticodon domain. Authors: Basti, M.M. / Stuart, J.W. / Lam, A.T. / Guenther, R. / Agris, P.F. #1: Journal: J.Mol.Biol. / Year: 1995 Title: Direct Observation of Two Base-Pairing Modes of a Cytosine-Thymine Analogue with Guanine in a DNA Z-Form Duplex: Significance for Base Analogue Mutagenesis Authors: Moore, M.H. / Van Meervelt, L. / Salisbury, S.A. / Lin, P.K.T. / Brown, D.M. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 229d.cif.gz | 17.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb229d.ent.gz | 13.6 KB | Display | PDB format |
PDBx/mmJSON format | 229d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/29/229d ftp://data.pdbj.org/pub/pdb/validation_reports/29/229d | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 5222.388 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: CHEMICALLY SYNTHESIZED / Keywords: DEOXYRIBONUCLEIC ACID |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other |
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-Processing
NMR software | Name: Discover / Developer: BIOSYM TECHNOLOGIES / Classification: refinement |
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Refinement | Software ordinal: 1 Details: NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 537 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 THE SOLUTION STRUCTURE OF THE 17-MER DNA ...Details: NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 537 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 THE SOLUTION STRUCTURE OF THE 17-MER DNA HAIRPIN LOOP WAS DETERMINED BASED ON 246 DISTANCE AND DIHEDRAL RESTRAINTS ESTIMATED FROM 2D NOE SPECTRUM. TEN LOW ENERGY STRUCTURES WERE USED TO GENERATE THIS AVERAGE STRUCTURE WHICH WAS FURTHER ENERGY MINIMIZED. |
NMR ensemble | Conformers submitted total number: 1 |