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Yorodumi- PDB-1zoi: Crystal Structure of a Stereoselective Esterase from Pseudomonas ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1zoi | ||||||
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Title | Crystal Structure of a Stereoselective Esterase from Pseudomonas putida IFO12996 | ||||||
Components | esterase | ||||||
Keywords | HYDROLASE / Esterase / Pseudomonas putida / alpha/beta hydrolase fold | ||||||
Function / homology | alpha/beta hydrolase fold / Alpha/beta hydrolase fold-1 / Alpha/Beta hydrolase fold, catalytic domain / Alpha/Beta hydrolase fold / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta / Esterase Function and homology information | ||||||
Biological species | Pseudomonas putida (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.6 Å | ||||||
Authors | Elmi, F. / Lee, H.T. / Huang, J.Y. / Hsieh, Y.C. / Wang, Y.L. / Chen, Y.J. / Shaw, S.Y. / Chen, C.J. | ||||||
Citation | Journal: J.Bacteriol. / Year: 2005 Title: Stereoselective esterase from Pseudomonas putida IFO12996 reveals alpha/beta hydrolase folds for D-beta-acetylthioisobutyric acid synthesis Authors: Elmi, F. / Lee, H.T. / Huang, J.Y. / Hsieh, Y.C. / Wang, Y.L. / Chen, Y.J. / Shaw, S.Y. / Chen, C.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1zoi.cif.gz | 167.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1zoi.ent.gz | 135.8 KB | Display | PDB format |
PDBx/mmJSON format | 1zoi.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/zo/1zoi ftp://data.pdbj.org/pub/pdb/validation_reports/zo/1zoi | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Details | The biological assembly is a homotrimer. |
-Components
#1: Protein | Mass: 30201.867 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Pseudomonas putida (bacteria) / Production host: Escherichia coli (E. coli) References: UniProt: Q3HWU8, Hydrolases; Acting on ester bonds #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.091 Å3/Da / Density % sol: 40.09 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 4 Details: ammonium sulphate, citric acid, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: SPring-8 / Beamline: BL12B2 / Wavelength: 1 Å |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Oct 27, 2004 |
Radiation | Monochromator: Si 111 CHANNEL / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.6→25 Å / Num. all: 97023 / Num. obs: 93768 / % possible obs: 92.3 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 6.3 % |
Reflection shell | Resolution: 1.6→1.66 Å / % possible all: 82.3 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.6→25 Å / σ(F): 2 / Stereochemistry target values: Engh & Huber
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.6→25 Å
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Refine LS restraints |
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