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- PDB-1zlh: Crystal structure of the tick carboxypeptidase inhibitor in compl... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1zlh | ||||||
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Title | Crystal structure of the tick carboxypeptidase inhibitor in complex with bovine carboxypeptidase A | ||||||
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![]() | HYDROLASE/HYDROLASE INHIBITOR / inhibitor-metallocarboxypeptidase complex / beta-defensin fold (TCI) / eight-stranded twisted beta-sheet surrounded by eight alpha-helices (CPA) / HYDROLASE-HYDROLASE INHIBITOR COMPLEX | ||||||
Function / homology | ![]() carboxypeptidase A / acquisition of nutrients from host / metalloendopeptidase inhibitor activity / leukotriene metabolic process / enzyme inhibitor activity / metallocarboxypeptidase activity / blood coagulation / toxin activity / proteolysis / extracellular space ...carboxypeptidase A / acquisition of nutrients from host / metalloendopeptidase inhibitor activity / leukotriene metabolic process / enzyme inhibitor activity / metallocarboxypeptidase activity / blood coagulation / toxin activity / proteolysis / extracellular space / zinc ion binding / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Arolas, J.L. / Popowicz, G.M. / Lorenzo, J. / Sommerhoff, C.P. / Huber, R. / Aviles, F.X. / Holak, T.A. | ||||||
![]() | ![]() Title: The Three-Dimensional Structures of Tick Carboxypeptidase Inhibitor in Complex with A/B Carboxypeptidases Reveal a Novel Double-headed Binding Mode Authors: Arolas, J.L. / Popowicz, G.M. / Lorenzo, J. / Sommerhoff, C.P. / Huber, R. / Aviles, F.X. / Holak, T.A. #1: Journal: J.Biol.Chem. / Year: 2005 Title: A carboxypeptidase inhibitor from the tick Rhipicephalus bursa: isolation, cDNA cloning, recombinant expression, and characterization Authors: Arolas, J.L. / Lorenzo, J. / Rovira, A. / Castella, J. / Aviles, F.X. / Sommerhoff, C.P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 158.7 KB | Display | ![]() |
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PDB format | ![]() | 130.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 431.8 KB | Display | ![]() |
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Full document | ![]() | 434.3 KB | Display | |
Data in XML | ![]() | 19.2 KB | Display | |
Data in CIF | ![]() | 28.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 34721.750 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||
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#2: Protein | Mass: 7945.104 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||
#3: Chemical | ChemComp-ZN / #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.1 Å3/Da / Density % sol: 40.8 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 0.2M sodium cacodylate, 0.2M zinc acetate dihydrate, 7%(w/v) PEG 8000, 10%(w/v) dried dioxan, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: MAR scanner 345 mm plate / Detector: IMAGE PLATE / Date: Feb 7, 2004 / Details: mirror |
Radiation | Monochromator: mirror / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.67→30 Å / Num. all: 39265 / Num. obs: 34176 / % possible obs: 87 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 3.7 % / Rmerge(I) obs: 0.06 |
Reflection shell | Resolution: 1.67→1.8 Å / Rmerge(I) obs: 0.134 / Num. unique all: 3786 / % possible all: 61.5 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 12.551 Å2
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Refinement step | Cycle: LAST / Resolution: 1.7→55.9 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.7→1.744 Å / Total num. of bins used: 20 /
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