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Yorodumi- PDB-1z30: NMR structure of the apical part of stemloop D from cloverleaf 1 ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1z30 | ||||||||||||||||||
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Title | NMR structure of the apical part of stemloop D from cloverleaf 1 of bovine enterovirus 1 RNA | ||||||||||||||||||
Components | 5'-R(*Keywords | RNA / cGUUAg RNA tetraloop / cUNCGg-type backbone conformation / A-form helix | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / distance geometry, simulated annealing, energy minimisation | Authors | Ihle, Y. / Ohlenschlager, O. / Duchardt, E. / Ramachandran, R. / Gorlach, M. | Citation | Journal: Nucleic Acids Res. / Year: 2005 | Title: A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA Authors: Ihle, Y. / Ohlenschlager, O. / Hafner, S. / Duchardt, E. / Zacharias, M. / Seitz, S. / Zell, R. / Ramachandran, R. / Gorlach, M. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1z30.cif.gz | 167.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1z30.ent.gz | 140.6 KB | Display | PDB format |
PDBx/mmJSON format | 1z30.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1z30_validation.pdf.gz | 318.1 KB | Display | wwPDB validaton report |
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Full document | 1z30_full_validation.pdf.gz | 401.9 KB | Display | |
Data in XML | 1z30_validation.xml.gz | 4.3 KB | Display | |
Data in CIF | 1z30_validation.cif.gz | 7.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/z3/1z30 ftp://data.pdbj.org/pub/pdb/validation_reports/z3/1z30 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 5765.451 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: The sequence of this RNA naturally exist in bovine enterovirus 1 (Virus) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Details |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: distance geometry, simulated annealing, energy minimisation Software ordinal: 1 Details: 518 upper limit distance constraints derived from NOE cross peaks, 184 torsion angle constraints defining 156 torsion angles, 36 hydrogen bond constraints | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy, target function Conformers calculated total number: 100 / Conformers submitted total number: 15 |