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- PDB-2m4w: single G-bulge in a conserved regulatory region of the HEV genome -
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Open data
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Basic information
Entry | Database: PDB / ID: 2m4w | ||||||||||||||||||
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Title | single G-bulge in a conserved regulatory region of the HEV genome | ||||||||||||||||||
![]() | RNA (5'-R(*![]() RNA / G-bulge / internal loop | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / torsion angle dynamics, simulated annealing | ![]() Lescrinier, E. | ![]() ![]() Title: Binding of a naphtyridine analogue to the single G-bulge in a conserved regulatory region of the HEV genome Authors: Lescrinier, E. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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PDBx/mmCIF format | ![]() | 105.4 KB | Display | ![]() |
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PDB format | ![]() | 87.8 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 537.8 KB | Display | ![]() |
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Full document | ![]() | 613.1 KB | Display | |
Data in XML | ![]() | 9.5 KB | Display | |
Data in CIF | ![]() | 10.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 5490.349 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics, simulated annealing / Software ordinal: 1 | |||||||||
NMR representative | Selection criteria: closest to the average | |||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 10 / Conformers submitted total number: 10 / Representative conformer: 3 |