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Yorodumi- PDB-1y5c: The structure of a lactoferricinB derivative bound to micelles (L... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1y5c | ||||||
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Title | The structure of a lactoferricinB derivative bound to micelles (LfcinB4-14) | ||||||
Components | Lactotransferrin | ||||||
Keywords | TRANSPORT PROTEIN / Micelle-bound | ||||||
Function / homology | Lactoferrin Function and homology information | ||||||
Method | SOLUTION NMR | ||||||
Authors | Nguyen, L.T. / Schibli, D.J. / Vogel, H.J. | ||||||
Citation | Journal: J.Pept.Sci. / Year: 2005 Title: Structural studies and model membrane interactions of two peptides derived from bovine lactoferricin Authors: Nguyen, L.T. / Schibli, D.J. / Vogel, H.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1y5c.cif.gz | 82.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1y5c.ent.gz | 56.9 KB | Display | PDB format |
PDBx/mmJSON format | 1y5c.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1y5c_validation.pdf.gz | 328.1 KB | Display | wwPDB validaton report |
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Full document | 1y5c_full_validation.pdf.gz | 445.1 KB | Display | |
Data in XML | 1y5c_validation.xml.gz | 5 KB | Display | |
Data in CIF | 1y5c_validation.cif.gz | 7.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/y5/1y5c ftp://data.pdbj.org/pub/pdb/validation_reports/y5/1y5c | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1549.910 Da / Num. of mol.: 1 / Fragment: residues 4-14 / Source method: obtained synthetically Details: This sequence is derived from residues 4-14 of lactoferricinB (Bovine). References: UniProt: Q0PGA5*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
-Sample preparation
Details | Contents: 3mM LfcinB4-14 with 180mM SDS, 90% H2O, 10% D2O / Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 4.4 / Pressure: ambient / Temperature: 310 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 500 MHz |
-Processing
NMR software |
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NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |