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- PDB-1kr8: Refinement of d(GCGAAGC) Hairpin Structure Using One-and Two-Bond... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1kr8 | ||||||||||||||||||
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Title | Refinement of d(GCGAAGC) Hairpin Structure Using One-and Two-Bonds Residual Dipolar Couplings | ||||||||||||||||||
![]() | 5'-D(*![]() DNA / hairpin / GA mismatch | Function / homology | DNA | ![]() Method | SOLUTION NMR / molecular dynamics | ![]() Padrta, P. / Stefl, R. / Zidek, L. / Sklenar, V. | ![]() ![]() Title: Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-Bond Residual Dipolar Couplings Authors: Padrta, P. / Stefl, R. / Kralik, L. / Zidek, L. / Sklenar, V. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 58.5 KB | Display | ![]() |
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PDB format | ![]() | 39.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 298.7 KB | Display | ![]() |
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Full document | ![]() | 365.8 KB | Display | |
Data in XML | ![]() | 3.8 KB | Display | |
Data in CIF | ![]() | 5.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 2147.437 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: This sequence occurs naturally in replication origins of phage phiX174, in herpes simplex virus, in E. coli heat-shock gene and rRNA genes. |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined using triple-resonance NMR spectroscopy in isotropic and liquid crystalline phase. |
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Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 500 MHz |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 14 / Conformers submitted total number: 14 |