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Yorodumi- PDB-1x91: Crystal structure of mutant form A of a pectin methylesterase inh... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1x91 | ||||||
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Title | Crystal structure of mutant form A of a pectin methylesterase inhibitor from Arabidopsis | ||||||
Components | invertase/pectin methylesterase inhibitor family protein | ||||||
Keywords | PROTEIN BINDING / four-helix bundle / alpha hairpin / disulfide bridge / domain-swapping / linker / proline / mutant | ||||||
Function / homology | Function and homology information pectinesterase inhibitor activity / pollen tube tip / pollen tube growth / apoplast Similarity search - Function | ||||||
Biological species | Arabidopsis thaliana (thale cress) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.5 Å | ||||||
Authors | Hothorn, M. / Wolf, S. / Aloy, P. / Greiner, S. / Scheffzek, K. | ||||||
Citation | Journal: Plant Cell / Year: 2004 Title: Structural insights into the target specificity of plant invertase and pectin methylesterase inhibitory proteins Authors: Hothorn, M. / Wolf, S. / Aloy, P. / Greiner, S. / Scheffzek, K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1x91.cif.gz | 44.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1x91.ent.gz | 30.8 KB | Display | PDB format |
PDBx/mmJSON format | 1x91.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/x9/1x91 ftp://data.pdbj.org/pub/pdb/validation_reports/x9/1x91 | HTTPS FTP |
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-Related structure data
Related structure data | 1x8zC 1x90SC C: citing same article (ref.) S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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Details | The biologically assembly is consistent with the content of the asymmetric unit, monomer |
-Components
#1: Protein | Mass: 16418.689 Da / Num. of mol.: 1 / Fragment: residues 1-149 / Mutation: P28A Source method: isolated from a genetically manipulated source Source: (gene. exp.) Arabidopsis thaliana (thale cress) / Tissue: APOPLAST-CELL WALL / Gene: AT1G48020 / Plasmid: pETM 20 / Production host: Escherichia coli (E. coli) / Strain (production host): origami (DE3) / References: UniProt: Q9LNF2 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 49 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5.6 Details: 0.2M (NH4)2SO4, 0.3M Na/K tartrate, 0.1M Na citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID14-2 / Wavelength: 0.933 Å |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Apr 18, 2004 / Details: toroidal mirror |
Radiation | Monochromator: Diamond (111), Ge(220) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.933 Å / Relative weight: 1 |
Reflection | Resolution: 1.5→54.23 Å / Num. all: 24884 / Num. obs: 24884 / % possible obs: 99.8 % / Observed criterion σ(F): -3 / Observed criterion σ(I): -3 / Redundancy: 3.6 % / Rmerge(I) obs: 0.053 / Net I/σ(I): 15.4 |
Reflection shell | Resolution: 1.5→1.54 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.358 / Mean I/σ(I) obs: 3.6 / Num. unique all: 1833 / % possible all: 98.7 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1X90 CHAIN A Resolution: 1.5→54.23 Å / Isotropic thermal model: ISOTROPIC / Cross valid method: TROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 15.278 Å2 | |||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.5→54.23 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.5→1.54 Å
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