[English] 日本語
![](img/lk-miru.gif)
- PDB-1w7j: Crystal Structure Of Myosin V Motor With Essential Light Chain + ... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1w7j | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal Structure Of Myosin V Motor With Essential Light Chain + ADP-BeFx - Near Rigor | ||||||
![]() |
| ||||||
![]() | MOTOR PROTEIN / UNCONVENTIONAL MYOSIN / MYOSIN V / CHICKEN / MOLECULAR MOTOR / ATPASE / ELC / IQ MOTIF / MUSCLE PROTEIN / ATP-BINDING / ACTIN- BINDING / CALMODULIN-BINDING / MYOSIN / PHOSPHORYLATION | ||||||
Function / homology | ![]() minus-end directed microfilament motor activity / unconventional myosin complex / insulin-responsive compartment / vesicle transport along actin filament / muscle myosin complex / muscle filament sliding / myosin II complex / myosin complex / structural constituent of muscle / microfilament motor activity ...minus-end directed microfilament motor activity / unconventional myosin complex / insulin-responsive compartment / vesicle transport along actin filament / muscle myosin complex / muscle filament sliding / myosin II complex / myosin complex / structural constituent of muscle / microfilament motor activity / filamentous actin / cytoskeletal motor activity / Smooth Muscle Contraction / muscle contraction / skeletal muscle tissue development / vesicle-mediated transport / actin filament organization / protein localization to plasma membrane / cellular response to insulin stimulus / actin filament binding / actin cytoskeleton / vesicle / calmodulin binding / Golgi membrane / calcium ion binding / extracellular exosome / ATP binding / membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Coureux, P.-D. / Sweeney, H.L. / Houdusse, A. | ||||||
![]() | ![]() Title: Three Myosin V Structures Delineate Essential Features of Chemo-Mechanical Transduction Authors: Coureux, P.-D. / Sweeney, H.L. / Houdusse, A. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 199.5 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 153.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 1w7iC ![]() 1w8jC ![]() 1oe9S S: Starting model for refinement C: citing same article ( |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
|
-
Components
-Protein , 2 types, 2 molecules AB
#1: Protein | Mass: 91607.172 Da / Num. of mol.: 1 / Fragment: MOTOR DOMAIN, RESIDUES 1-792 Source method: isolated from a genetically manipulated source Details: ADP-BEFX / Source: (gene. exp.) ![]() ![]() ![]() ![]() |
---|---|
#2: Protein | Mass: 17090.277 Da / Num. of mol.: 1 / Fragment: RESIDUES 59-208 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
-Non-polymers , 4 types, 528 molecules ![](data/chem/img/MG.gif)
![](data/chem/img/ADP.gif)
![](data/chem/img/BEF.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/ADP.gif)
![](data/chem/img/BEF.gif)
![](data/chem/img/HOH.gif)
#3: Chemical | ChemComp-MG / |
---|---|
#4: Chemical | ChemComp-ADP / |
#5: Chemical | ChemComp-BEF / |
#6: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 3.3 Å3/Da / Density % sol: 61.9 % |
---|---|
Crystal grow | pH: 6.3 Details: 12% PEG 8000, 50 MM MES PH 6.3, 2 MM DTT AND 2 MM NAN3 |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Apr 15, 2003 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.934 Å / Relative weight: 1 |
Reflection | Resolution: 2→84.51 Å / Num. obs: 86066 / % possible obs: 99.8 % / Redundancy: 3.1 % / Rmerge(I) obs: 0.065 / Net I/σ(I): 14.9 |
Reflection shell | Resolution: 2→2.05 Å / Redundancy: 3.1 % / Rmerge(I) obs: 0.323 / Mean I/σ(I) obs: 3.9 / % possible all: 100 |
-
Processing
Software |
| ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1OE9 Resolution: 2→20 Å / SU B: 2.948 / SU ML: 0.084 / ESU R: 0.144 / ESU R Free: 0.135
| ||||||||||||||||
Displacement parameters | Biso mean: 27.553 Å2
| ||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→20 Å
|