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Open data
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Basic information
Entry | Database: PDB / ID: 1vxc | ||||||
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Title | NATIVE SPERM WHALE MYOGLOBIN | ||||||
![]() | MYOGLOBIN | ||||||
![]() | OXYGEN STORAGE / SPERM WHALE MYOGLOBIN / PH VALUES / CONFORMATIONAL CHANGES | ||||||
Function / homology | ![]() nitrite reductase activity / Oxidoreductases; Acting on other nitrogenous compounds as donors / sarcoplasm / Oxidoreductases; Acting on a peroxide as acceptor; Peroxidases / removal of superoxide radicals / oxygen carrier activity / oxygen binding / peroxidase activity / heme binding / extracellular exosome / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Yang, F. / Phillips Jr., G.N. | ||||||
![]() | ![]() Title: Crystal structures of CO-, deoxy- and met-myoglobins at various pH values. Authors: Yang, F. / Phillips Jr., G.N. #1: ![]() Title: X-Ray Structure and Refinement of Carbon-Monoxy (Fe II)-Myoglobin at 1.5 A Resolution Authors: Kuriyan, J. / Wilz, S. / Karplus, M. / Petsko, G.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.1 KB | Display | ![]() |
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PDB format | ![]() | 32.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 828 KB | Display | ![]() |
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Full document | ![]() | 831.4 KB | Display | |
Data in XML | ![]() | 11 KB | Display | |
Data in CIF | ![]() | 14.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1speC ![]() 1vxaC ![]() 1vxbC ![]() 1vxdC ![]() 1vxeC ![]() 1vxfC ![]() 1vxgC ![]() 1vxhC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 17234.951 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: PH 5.0, 4 DEGREES CELSIUS / Source: (natural) ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / |
#3: Chemical | ChemComp-HEM / |
#4: Chemical | ChemComp-CMO / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.94 Å3/Da / Density % sol: 36.5 % |
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Crystal grow | pH: 5 / Details: pH 5.0 |
Crystal grow | *PLUS Method: batch method |
Components of the solutions | *PLUS Conc.: 75 %sat / Common name: ammonium salfate |
-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Wavelength: 1.5418 |
Detector | Type: SIEMENS-NICOLET X100 / Detector: AREA DETECTOR / Date: Dec 31, 1992 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→30 Å / Num. obs: 15401 / Observed criterion σ(I): 0 / Rmerge(I) obs: 0.056 |
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Processing
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Refinement | Resolution: 1.7→5 Å / σ(F): 0 / Details: TERMINAL RESIDUES 151 - 153 ARE DISORDERED.
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Refinement step | Cycle: LAST / Resolution: 1.7→5 Å
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Refine LS restraints |
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Xplor file |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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