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Yorodumi- PDB-1vta: THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1vta | ||||||||||||||||||
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Title | THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATURE | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA | Function / homology | DNA | Function and homology information Method | X-RAY DIFFRACTION / Resolution: 2.5 Å | Authors | Eisenstein, M. / Frolow, F. / Shakked, Z. / Rabinovich, D. | Citation | Journal: Nucleic Acids Res. / Year: 1990 | Title: The structure and hydration of the A-DNA fragment d(GGGTACCC) at room temperature and low temperature. Authors: Eisenstein, M. / Frolow, F. / Shakked, Z. / Rabinovich, D. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1vta.cif.gz | 18.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1vta.ent.gz | 11.4 KB | Display | PDB format |
PDBx/mmJSON format | 1vta.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1vta_validation.pdf.gz | 323.7 KB | Display | wwPDB validaton report |
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Full document | 1vta_full_validation.pdf.gz | 325.4 KB | Display | |
Data in XML | 1vta_validation.xml.gz | 1.6 KB | Display | |
Data in CIF | 1vta_validation.cif.gz | 2.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vt/1vta ftp://data.pdbj.org/pub/pdb/validation_reports/vt/1vta | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 2427.605 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.78 Å3/Da / Density % sol: 55.77 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / Details: 277.00K | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ROTATING ANODE |
Detector | Type: RIGAKU AFC-5 / Detector: DIFFRACTOMETER |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 2.5 Å / Num. all: 3403 / Num. obs: 2008 / Observed criterion σ(F): 2 |
-Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Resolution: 2.5→8 Å / σ(F): 2 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 2.5→8 Å
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