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- PDB-1vt9: The structure and hydration of the A-DNA fragment D(GGGTACCC) at ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1vt9 | ||||||||||||||||||
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Title | The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / A-DNA / DOUBLE HELIX | Function / homology | DNA | ![]() Method | ![]() ![]() Eisenstein, M. / Frolow, F. / Shakked, Z. / Rabinovich, D. | ![]() ![]() Title: The structure and hydration of the A-DNA fragment d(GGGTACCC) at room temperature and low temperature. Authors: Eisenstein, M. / Frolow, F. / Shakked, Z. / Rabinovich, D. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 18.7 KB | Display | ![]() |
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PDB format | ![]() | 11.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 324.1 KB | Display | ![]() |
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Full document | ![]() | 323.5 KB | Display | |
Data in XML | ![]() | 1.5 KB | Display | |
Data in CIF | ![]() | 2.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: DNA chain | Mass: 2427.605 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.9 Å3/Da / Density % sol: 57.57 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K Details: MPD, MgCl2, spermine, sodium cacodylate, temperature 277K | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Ambient temp details: ROOM TEMPERATURE |
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Diffraction source | Source: SEALED TUBE |
Detector | Type: ENRAF-NONIUS CAD4 / Detector: DIFFRACTOMETER |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 2.5 Å / Num. all: 1818 / Num. obs: 1582 / Observed criterion σ(F): 2 |
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Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Resolution: 2.5→8 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Resolution: 2.5→8 Å
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