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- PDB-1vjz: Crystal structure of Endoglucanase (TM1752) from Thermotoga marit... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1vjz | ||||||
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Title | Crystal structure of Endoglucanase (TM1752) from Thermotoga maritima at 2.05 A resolution | ||||||
![]() | endoglucanase | ||||||
![]() | ENDOGLUCANASE / TM1752 / STRUCTURAL GENOMICS / JCSG / PSI / Protein Structure Initiative / Joint Center for Structural Genomics | ||||||
Function / homology | ![]() glucan catabolic process / beta-glucosidase activity / cell surface / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Joint Center for Structural Genomics (JCSG) | ||||||
![]() | ![]() Title: Crystal structure of Endoglucanase (TM1752) from Thermotoga maritima at 2.05 A resolution Authors: Joint Center for Structural Genomics (JCSG) | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 83.3 KB | Display | ![]() |
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PDB format | ![]() | 65.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 419.9 KB | Display | ![]() |
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Full document | ![]() | 420 KB | Display | |
Data in XML | ![]() | 15.4 KB | Display | |
Data in CIF | ![]() | 22.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 41096.855 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal |
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Crystal grow |
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-Data collection
Diffraction |
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Diffraction source |
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Detector |
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Radiation |
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Radiation wavelength |
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Reflection | Resolution: 2.05→50 Å / Num. obs: 26538 / % possible obs: 94.64 % / Redundancy: 3.82 % / Biso Wilson estimate: 34.42 Å2 / Rmerge(I) obs: 0.095 / Net I/σ(I): 14.57 | ||||||||||||||||||
Reflection shell | Resolution: 2.05→2.12 Å / Redundancy: 2.75 % / Rmerge(I) obs: 0.334 / Mean I/σ(I) obs: 3 / Num. unique all: 2053 / % possible all: 75.23 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 20.751 Å2
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Refinement step | Cycle: LAST / Resolution: 2.05→32.34 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.05→2.103 Å / Total num. of bins used: 20
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Refinement TLS params. | Method: refined / Origin x: 7.864 Å / Origin y: 26.646 Å / Origin z: 47.722 Å
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Refinement TLS group | Selection: ALL |