Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor / fatty acid peroxidase activity / nitric oxide dioxygenase activity, heme protein as donor / negative regulation of hepatic stellate cell activation / Intracellular oxygen transport / nitric oxide catabolic process / negative regulation of collagen biosynthetic process / carbon monoxide binding / negative regulation of fibroblast migration / catalase activity ...Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor / fatty acid peroxidase activity / nitric oxide dioxygenase activity, heme protein as donor / negative regulation of hepatic stellate cell activation / Intracellular oxygen transport / nitric oxide catabolic process / negative regulation of collagen biosynthetic process / carbon monoxide binding / negative regulation of fibroblast migration / catalase activity / superoxide dismutase / superoxide dismutase activity / fatty acid oxidation / nitrite reductase activity / Oxidoreductases; Acting on other nitrogenous compounds as donors / oxygen transport / Oxidoreductases; Acting on a peroxide as acceptor; Peroxidases / eNOS activation / removal of superoxide radicals / oxygen carrier activity / oxygen binding / peroxidase activity / response to oxidative stress / oxidoreductase activity / response to hypoxia / neuron projection / iron ion binding / neuronal cell body / heme binding / nucleus / cytoplasm / cytosol Similarity search - Function
Type: MARRESEARCH / Detector: CCD / Date: Nov 15, 2002
Radiation
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.72 Å / Relative weight: 1
Reflection
Resolution: 2.6→30 Å / Num. obs: 19995 / % possible obs: 99.5 % / Redundancy: 11 % / Rmerge(I) obs: 0.057 / Net I/σ(I): 35
Reflection shell
Resolution: 2.6→2.69 Å / Redundancy: 10 % / Rmerge(I) obs: 0.159 / Mean I/σ(I) obs: 11 / % possible all: 96.6
-
Processing
Software
Name
Classification
REFMAC
refinement
DENZO
datareduction
SCALEPACK
datascaling
SOLVE
phasing
Refinement
Method to determine structure: SAD / Resolution: 2.59→29.88 Å / SU B: 12.52 / SU ML: 0.277 / Cross valid method: THROUGHOUT / ESU R Free: 0.387 Details: RESIDUES A1-A17, A172-A190, AND B1- B17, B172-B190 ARE MISSING IN THE MODEL BECAUSE OF POOR DIFFRACTION DATA
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.28376
516
4.8 %
RANDOM
Rwork
0.20787
-
-
-
obs
0.21161
10166
98.87 %
-
Displacement parameters
Biso mean: 38.974 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0.04 Å2
0 Å2
0 Å2
2-
-
-0.05 Å2
0 Å2
3-
-
-
0.01 Å2
Refinement step
Cycle: LAST / Resolution: 2.59→29.88 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2464
0
86
30
2580
+
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