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Open data
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Basic information
Entry | Database: PDB / ID: 1u4p | ||||||
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Title | Crystal Structure of human RANTES mutant K45E | ||||||
![]() | Small inducible cytokine A5 | ||||||
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Function / homology | ![]() regulation of chronic inflammatory response / CCR4 chemokine receptor binding / chemokine receptor antagonist activity / activation of phospholipase D activity / positive regulation of cellular biosynthetic process / CCR1 chemokine receptor binding / positive regulation of natural killer cell chemotaxis / negative regulation of macrophage apoptotic process / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Shaw, J.P. / Johnson, Z. / Borlat, F. / Zwahlen, C. / Kungl, A. / Roulin, K. / Harrenga, A. / Wells, T.N.C. / Proudfoot, A.E.I. | ||||||
![]() | ![]() Title: The X-ray structure of RANTES: heparin-derived disaccharides allows the rational design of chemokine inhibitors. Authors: Shaw, J.P. / Johnson, Z. / Borlat, F. / Zwahlen, C. / Kungl, A. / Roulin, K. / Harrenga, A. / Wells, T.N. / Proudfoot, A.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 42.7 KB | Display | ![]() |
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PDB format | ![]() | 32.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 7861.945 Da / Num. of mol.: 2 / Mutation: K45E Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-ACY / | ![]() #3: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2 Å3/Da / Density % sol: 36.9 % |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: 20% PEG 400, 100mM acetate buffer, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH / Detector: AREA DETECTOR / Date: Jan 23, 2002 / Details: mirrors |
Radiation | Monochromator: Osmic MaxFlux Confocal Mirrors / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.7→20 Å / Num. obs: 13261 / % possible obs: 91.7 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 1 / Redundancy: 5.1 % / Biso Wilson estimate: 15.1 Å2 / Rmerge(I) obs: 0.042 / Net I/σ(I): 29 |
Reflection shell | Resolution: 1.7→1.76 Å / Rmerge(I) obs: 0.082 / Mean I/σ(I) obs: 18.9 / Num. unique all: 1253 / % possible all: 88.2 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Solvent model: BABINET / Bsol: 280 Å2 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 18.1 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.7→15.9 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.7→1.81 Å / Rfactor Rfree error: 0.029 / Total num. of bins used: 6
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Xplor file |
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