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- PDB-1tuk: Crystal structure of liganded type 2 non specific lipid transfer ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1tuk | ||||||
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Title | Crystal structure of liganded type 2 non specific lipid transfer protein from wheat | ||||||
![]() | Nonspecific lipid-transfer protein 2G | ||||||
![]() | LIPID TRANSPORT / ns-LTP2 / lipid transfer protein | ||||||
Function / homology | ![]() lipid transport / cell wall organization / lipid binding / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Hoh, F. / Pons, J.L. / Gautier, M.F. / De Lamotte, F. / Dumas, C. | ||||||
![]() | ![]() Title: Structure of a liganded type 2 non-specific lipid-transfer protein from wheat and the molecular basis of lipid binding. Authors: Hoh, F. / Pons, J.L. / Gautier, M.F. / de Lamotte, F. / Dumas, C. #1: ![]() Title: Refined solution structure of a liganded type 2 wheat nonspecific lipid transfer protein Authors: Pons, J.L. / de Lamotte, F. / Gautier, M.F. / Delsuc, M.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 37.3 KB | Display | ![]() |
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PDB format | ![]() | 29.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 6985.943 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() | ||||
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#2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.91 Å3/Da / Density % sol: 35.5 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6 Details: PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Sep 16, 2002 |
Radiation | Monochromator: Mirror / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.8 Å / Relative weight: 1 |
Reflection | Resolution: 1.12→32.97 Å / Num. all: 22535 / Num. obs: 22535 / % possible obs: 94.8 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 |
Reflection shell | Resolution: 1.123→1.153 Å / % possible all: 79.71 |
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Processing
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Refinement | Method to determine structure: AB INITIO PHASING / Resolution: 1.12→32.9 Å / Cor.coef. Fo:Fc: 0.969 / Cor.coef. Fo:Fc free: 0.97 / SU B: 0.855 / SU ML: 0.018 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.032 / ESU R Free: 0.029 / Stereochemistry target values: MAXIMUM LIKELIHOOD
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 12.01 Å2
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Refinement step | Cycle: LAST / Resolution: 1.12→32.9 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.123→1.153 Å / Total num. of bins used: 20
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