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Yorodumi- PDB-1tpa: THE GEOMETRY OF THE REACTIVE SITE AND OF THE PEPTIDE GROUPS IN TR... -
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-Basic information
Entry | Database: PDB / ID: 1tpa | ||||||
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Title | THE GEOMETRY OF THE REACTIVE SITE AND OF THE PEPTIDE GROUPS IN TRYPSIN, TRYPSINOGEN AND ITS COMPLEXES WITH INHIBITORS | ||||||
Components |
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Keywords | COMPLEX (PROTEINASE/INHIBITOR) / COMPLEX (PROTEINASE-INHIBITOR) / COMPLEX (PROTEINASE-INHIBITOR) complex | ||||||
Function / homology | Function and homology information trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / potassium channel inhibitor activity / negative regulation of platelet aggregation / zymogen binding / serine protease inhibitor complex / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / cap snatching ...trypsinogen activation / negative regulation of serine-type endopeptidase activity / sulfate binding / potassium channel inhibitor activity / negative regulation of platelet aggregation / zymogen binding / serine protease inhibitor complex / molecular function inhibitor activity / negative regulation of thrombin-activated receptor signaling pathway / cap snatching / virion component / serine-type endopeptidase inhibitor activity / protease binding / hydrolase activity / RNA-directed RNA polymerase / viral RNA genome replication / RNA-dependent RNA polymerase activity / nucleotide binding / calcium ion binding / extracellular space / metal ion binding Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.9 Å | ||||||
Authors | Huber, R. / Bode, W. / Deisenhofer, J. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.B / Year: 1983 Title: The Geometry of the Reactive Site and of the Peptide Groups in Trypsin, Trypsinogen and its Complexes with Inhibitors Authors: Marquart, M. / Walter, J. / Deisenhofer, J. / Bode, W. / Huber, R. #1: Journal: Miami Winter Symp. / Year: 1976 Title: Structural Studies on the Pancreatic Trypsin Inhibitor-Trypsin Complex and its Free Components. Structure and Function Relationships in Serine Protease Inhibition and Catalysis Authors: Bode, W. / Schwager, P. / Huber, R. #2: Journal: Biophys.Struct.Mech. / Year: 1975 Title: The Structure of the Complex Formed by Bovine Trypsin and Bovine Pancreatic Trypsin Inhibitor. III. Structure of the Anhydro-Trypsin-Inhibitor Complex Authors: Huber, R. / Bode, W. / Kukla, D. / Kohl, U. / Ryan, C.A. #3: Journal: FEBS Lett. / Year: 1975 Title: The Single Calcium-Binding Site of Crystalline Bovine Beta-Trypsin Authors: Bode, W. / Schwager, P. #4: Journal: Bayer Symp. / Year: 1974 Title: Structure of the Complex Formed by Bovine Trypsin and Bovine Pancreatic Trypsin Inhibitor. Refinement of the Crystal Structure Analysis Authors: Huber, R. / Kukla, D. / Steigemann, W. / Deisenhofer, J. / Jones, A. #5: Journal: J.Mol.Biol. / Year: 1974 Title: Structure of the Complex Formed by Bovine Trypsin and Bovine Pancreatic Trypsin Inhibitor. II. Crystallographic Refinement at 1.9 Angstroms Resolution Authors: Huber, R. / Kukla, D. / Bode, W. / Schwager, P. / Bartels, K. / Deisenhofer, J. / Steigemann, W. #6: Journal: J.Mol.Biol. / Year: 1973 Title: Structure of the Complex Formed by Bovine Trypsin and Bovine Pancreatic Trypsin Inhibitor. Crystal Structure Determination and Stereochemistry of the Contact Region Authors: Ruehlmann, A. / Kukla, D. / Schwager, P. / Bartels, K. / Huber, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tpa.cif.gz | 65.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tpa.ent.gz | 48.9 KB | Display | PDB format |
PDBx/mmJSON format | 1tpa.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1tpa_validation.pdf.gz | 426.8 KB | Display | wwPDB validaton report |
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Full document | 1tpa_full_validation.pdf.gz | 432.7 KB | Display | |
Data in XML | 1tpa_validation.xml.gz | 14.8 KB | Display | |
Data in CIF | 1tpa_validation.cif.gz | 20.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tp/1tpa ftp://data.pdbj.org/pub/pdb/validation_reports/tp/1tpa | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Atom site foot note | 1: SEE REMARK 4. / 2: SEE REMARK 6. | ||||||||
Components on special symmetry positions |
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-Components
#1: Protein | Mass: 23324.287 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / Organ: PANCREAS / References: UniProt: P00760, trypsin |
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#2: Protein | Mass: 6527.568 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source References: UniProt: P00974 |
#3: Chemical | ChemComp-CA / |
#4: Water | ChemComp-HOH / |
Sequence details | RESIDUE SER E 195 HAS BEEN HYDROLYZED IN THIS MOLECULE, CONVERTING IT TO DEHYDROALANINE. TO ...RESIDUE SER E 195 HAS BEEN HYDROLYZED |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.28 Å3/Da / Density % sol: 62.48 % |
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Crystal grow | *PLUS Method: unknown |
-Processing
Refinement | Resolution: 1.9→6.8 Å / Rfactor Rwork: 0.175 | ||||||||||||
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Refinement step | Cycle: LAST / Resolution: 1.9→6.8 Å
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