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Open data
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Basic information
Entry | Database: PDB / ID: 1tf3 | ||||||
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Title | TFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES | ||||||
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![]() | TRANSCRIPTION/DNA / TFIIIA / PROTEIN / DNA / TRANSCRIPTION FACTOR / 5S RNA GENE / DNA BINDING PROTEIN / ZINC FINGER / COMPLEX (TRANSCRIPTION REGULATION-DNA) / TRANSCRIPTION-DNA COMPLEX | ||||||
Function / homology | ![]() ribosomal large subunit biogenesis / DNA binding / RNA binding / nucleus / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Foster, M.P. / Wuttke, D.S. / Radhakrishnan, I. / Case, D.A. / Gottesfeld, J.M. / Wright, P.E. | ||||||
![]() | ![]() Title: Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA. Authors: Foster, M.P. / Wuttke, D.S. / Radhakrishnan, I. / Case, D.A. / Gottesfeld, J.M. / Wright, P.E. #1: ![]() Title: Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity Authors: Wuttke, D.S. / Foster, M.P. / Case, D.A. / Gottesfeld, J.M. / Wright, P.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 1 MB | Display | ![]() |
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PDB format | ![]() | 862.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 369.5 KB | Display | ![]() |
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Full document | ![]() | 681.7 KB | Display | |
Data in XML | ![]() | 34.3 KB | Display | |
Data in CIF | ![]() | 67.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 4690.045 Da / Num. of mol.: 1 Fragment: C-BLOCK, NT 79-93 OF 5S RNA GENE, NON-CODING AND CODING STRANDS Source method: obtained synthetically Details: GENE FRAGMENT ENCODING FINGERS 1-3 OF TFIIIA WAS SUBCLONED INTO PET21A PLASMID AND EXPRESSED IN ESCHERICHIA COLI BL21 (DE3) CELLS. DNA OLIGONUCLEOTIDE WAS OBTAINED BY SOLID-PHASE SYNTHESIS |
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#2: DNA chain | Mass: 4489.926 Da / Num. of mol.: 1 Fragment: C-BLOCK, NT 79-93 OF 5S RNA GENE, NON-CODING AND CODING STRANDS Source method: obtained synthetically Details: GENE FRAGMENT ENCODING FINGERS 1-3 OF TFIIIA WAS SUBCLONED INTO PET21A PLASMID AND EXPRESSED IN ESCHERICHIA COLI BL21 (DE3) CELLS. DNA OLIGONUCLEOTIDE WAS OBTAINED BY SOLID-PHASE SYNTHESIS |
#3: Protein | Mass: 10686.225 Da / Num. of mol.: 1 / Fragment: FINGERS 1-3 OF TFIIIA, RESIDUES 1, 11 - 101 / Mutation: C35S Source method: isolated from a genetically manipulated source Details: MINIMAL DNA BINDING, ZF1-3 CONTAINS THREE ZINC ATOMS, TETRAHEDRALLY COORDINATED BY TWO CYSTEINE AND TWO HISTIDINE SIDE CHAINS Source: (gene. exp.) ![]() ![]() ![]() |
#4: Chemical |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: NO |
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Sample preparation
Sample conditions | pH: 6.7 / Temperature: 310 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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Processing
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NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. | |||||||||
NMR ensemble | Conformer selection criteria: RESTRAINT ENERGIES < 11 KCAL, NO DISTANCE VIOLATIONS > 0.3 A Conformers calculated total number: 64 / Conformers submitted total number: 22 |