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- PDB-1tem: 6 ALPHA HYDROXYMETHYL PENICILLOIC ACID ACYLATED ON THE TEM-1 BETA... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1tem | ||||||
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Title | 6 ALPHA HYDROXYMETHYL PENICILLOIC ACID ACYLATED ON THE TEM-1 BETA-LACTAMASE FROM ESCHERICHIA COLI | ||||||
![]() | TEM-1 BETA LACTAMASE | ||||||
![]() | HYDROLASE / ANTIBIOTIC RESISTANCE / TRANSPOSABLE ELEMENT | ||||||
Function / homology | ![]() beta-lactam antibiotic catabolic process / beta-lactamase activity / beta-lactamase / response to antibiotic Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Maveyraud, L. / Massova, I. / Samama, J.P. / Mobashery, S. | ||||||
![]() | Journal: J.Am.Chem.Soc. / Year: 1996 Title: Crystal Structure of 6Alpha-Hydroxymethylpenicillanate Complexed to the Tem-1 Beta-Lactamase from Escherichia Coli: Evidence on the Mechanism of Action of a Novel Inhibitor Designed by a Computer-Aided Process Authors: Maveyraud, L. / Massova, I. / Birck, C. / Miyashita, K. / Samama, J.P. / Mobashery, S. #1: ![]() Title: Design, Synthesis, and Evaluation of a Potent Mechanism-Based Inhibitor for the Tem Beta-Lactamase with Implications for the Enzyme Mechanism Authors: Miyashita, K. / Massova, I. / Taibi, P. / Mobashery, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 65.1 KB | Display | ![]() |
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PDB format | ![]() | 50.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 376.3 KB | Display | ![]() |
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Full document | ![]() | 377.7 KB | Display | |
Data in XML | ![]() | 6.8 KB | Display | |
Data in CIF | ![]() | 11.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 28984.076 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: VARIANT V84I, A184V,ACYL-ENZYME COMPLEX / Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-ALP / |
#3: Water | ChemComp-HOH / |
Compound details | THE STRUCTURE DEPOSITED IS AN ACYL-ENZYME COMPLEX, BETWEEN 6ALPHA-HYDROXYMETHYL PENICILLOIC ACID ...THE STRUCTURE DEPOSITED IS AN ACYL-ENZYME COMPLEX, BETWEEN 6ALPHA-HYDROXYMET |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.03 Å3/Da / Density % sol: 39.52 % | |||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 7.8 / Details: pH 7.8 | |||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 6 ℃ / Method: vapor diffusion, hanging drop / Details: Jelsch, C., (1992) J. Mol. Biol., 223, 377. | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 263 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Dec 15, 1995 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.933 Å / Relative weight: 1 |
Reflection | Num. obs: 17104 / % possible obs: 96.2 % / Observed criterion σ(I): 0 / Redundancy: 2.5 % / Biso Wilson estimate: 12.49 Å2 / Rmerge(I) obs: 0.046 |
Reflection | *PLUS Highest resolution: 1.95 Å / Lowest resolution: 22 Å / Num. measured all: 42284 |
Reflection shell | *PLUS Highest resolution: 1.95 Å / Lowest resolution: 2.02 Å / % possible obs: 94.8 % / Num. unique obs: 1524 / Num. measured obs: 3622 / Rmerge(I) obs: 0.076 |
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Processing
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Refinement | Resolution: 1.95→8 Å / σ(F): 0
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Displacement parameters | Biso mean: 12.35 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati d res low obs: 8 Å / Luzzati sigma a obs: 0.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.95→8 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.95→1.98 Å
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 12.359 Å2 |