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Yorodumi- PDB-1tab: STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1tab | ||||||
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Title | STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN | ||||||
Components |
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Keywords | HYDROLASE/HYDROLASE INHIBITOR / SERINE PROTEINASE / HYDROLASE-HYDROLASE INHIBITOR complex | ||||||
Function / homology | Function and homology information trypsin / serpin family protein binding / serine protease inhibitor complex / digestion / serine-type endopeptidase inhibitor activity / endopeptidase activity / serine-type endopeptidase activity / proteolysis / extracellular space / extracellular region / metal ion binding Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.3 Å | ||||||
Authors | Tsunogae, Y. / Tanaka, I. / Yamane, T. / Kikkawa, J.-I. / Ashida, T. / Ishikawa, C. / Watanabe, K. / Nakamura, S. / Takahashi, K. | ||||||
Citation | Journal: J.Biochem.(Tokyo) / Year: 1986 Title: Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin. Authors: Tsunogae, Y. / Tanaka, I. / Yamane, T. / Kikkawa, J. / Ashida, T. / Ishikawa, C. / Watanabe, K. / Nakamura, S. / Takahashi, K. #1: Journal: J.Biochem.(Tokyo) / Year: 1987 Title: The Structure of Bowman-Birk Type Protease Inhibitor A-II from Peanut (Arachis Hypogaea) at 3.3 Angstroms Resolution Authors: Suzuki, A. / Tsunogae, Y. / Tanaka, I. / Yamane, T. / Ashida, T. / Norioka, S. / Hara, S. / Ikenaka, T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tab.cif.gz | 61.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tab.ent.gz | 47.4 KB | Display | PDB format |
PDBx/mmJSON format | 1tab.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ta/1tab ftp://data.pdbj.org/pub/pdb/validation_reports/ta/1tab | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: PRO I 29 AND PRO I 71 ARE CIS PROLINES. |
-Components
#1: Protein | Mass: 23324.287 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / Tissue: PANCREAS / References: UniProt: P00760, trypsin |
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#2: Protein | Mass: 9142.119 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source References: UniProt: P01058 |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.15 Å3/Da / Density % sol: 42.74 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: unknown K / pH: 6.5 / Method: microdialysis / Details: took 3 from original paper | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
-Processing
Software | Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.2 / Highest resolution: 2.3 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.3 Å
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Refine LS restraints |
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