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- PDB-1rng: SOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF -

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Entry
Database: PDB / ID: 1rng
TitleSOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF
ComponentsRNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3')
KeywordsRNA / TETRALOOP
Function / homologyRNA / RNA (> 10)
Function and homology information
MethodSOLUTION NMR
AuthorsJucker, F.M. / Pardi, A.
Citation
Journal: Biochemistry / Year: 1995
Title: Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif.
Authors: Jucker, F.M. / Pardi, A.
#1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1990
Title: Architecture of Ribosomal RNA: Constraints on the Sequence of "Tetra-Loops"
Authors: Woese, C.R. / Winker, S. / Gutell, R.R.
History
DepositionSep 5, 1995Processing site: BNL
Revision 1.0Dec 7, 1995Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Mar 2, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3')


Theoretical massNumber of molelcules
Total (without water)3,8201
Polymers3,8201
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)5 / -
Representative

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Components

#1: RNA chain RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3')


Mass: 3820.296 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: OLIGONUCLEOTIDE MADE BY IN VITRO TRANSCRIPTION / Keywords: RIBONUCLEIC ACID

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR softwareName: X-PLOR / Developer: BRUNGER / Classification: refinement
RefinementSoftware ordinal: 1 / Details: NUCLEIC ACID PARAMETER SET.
NMR ensembleConformers submitted total number: 5

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