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Yorodumi- PDB-1esh: THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROM... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1esh | ||||||||||||||||||
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Title | THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA | ||||||||||||||||||
Components | RNA (5'-R(*Keywords | RNA / TRILOOP / STEM-LOOP / Brome Mosaic Virus | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / RMD WITH SIMULATED ANNEALING | Authors | Kim, C.-H. / Kao, C.C. / Tinoco Jr., I. | Citation | Journal: Nat.Struct.Biol. / Year: 2000 | Title: RNA motifs that determine specificity between a viral replicase and its promoter. Authors: Kim, C.H. / Kao, C.C. / Tinoco Jr., I. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1esh.cif.gz | 16.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1esh.ent.gz | 9.8 KB | Display | PDB format |
PDBx/mmJSON format | 1esh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1esh_validation.pdf.gz | 293.2 KB | Display | wwPDB validaton report |
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Full document | 1esh_full_validation.pdf.gz | 293 KB | Display | |
Data in XML | 1esh_validation.xml.gz | 1.5 KB | Display | |
Data in CIF | 1esh_validation.cif.gz | 1.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/es/1esh ftp://data.pdbj.org/pub/pdb/validation_reports/es/1esh | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 4156.541 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: SEQUENCE OCCURS NATURALLY IN BROME MOSAIC VIRUS EXCEPT FOR THE TERMINAL TWO GC BPS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: THE SUBMITTED STRUCTURE IS THE AVERAGE AND ENERGY MINIMIZED |
-Sample preparation
Details | Contents: RNA IN AQUEOUS SOLUTION |
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Sample conditions | Ionic strength: 50mM NACL / pH: 6.5 / Pressure: 1 atm / Temperature: 278 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: RMD WITH SIMULATED ANNEALING / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: LOWEST ENERGY / Conformers calculated total number: 22 / Conformers submitted total number: 1 |