+Open data
-Basic information
Entry | Database: PDB / ID: 1rmv | ||||||
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Title | RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION | ||||||
Components |
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Keywords | Virus/RNA / RIBGRASS MOSAIC VIRUS / TOBAMOVIRUS / RMV CLUSTER / COAT PROTEIN (VIRAL) / COMPLEX (COAT PROTEIN-RNA) / Helical virus / Virus-RNA COMPLEX | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Ribgrass mosaic virus | ||||||
Method | FIBER DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.9 Å | ||||||
Authors | Wang, H. / Stubbs, G. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.A / Year: 1993 Title: Molecular dynamics in refinement against fiber diffraction data. Authors: Wang, H. / Stubbs, G. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Preliminary X-Ray Diffraction Studies of Ribgrass Mosaic Virus Authors: Wang, H. / Planchart, A. / Allen, D. / Pattanayek, R. / Stubbs, G. #2: Journal: Acta Crystallogr.,Sect.A / Year: 1985 Title: Solving the Phase Problem in Fiber Diffraction. Application to Tobacco Mosaic Virus at 3.6 Angstroms Resolution Authors: Namba, K. / Stubbs, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rmv.cif.gz | 41.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1rmv.ent.gz | 32.6 KB | Display | PDB format |
PDBx/mmJSON format | 1rmv.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rm/1rmv ftp://data.pdbj.org/pub/pdb/validation_reports/rm/1rmv | HTTPS FTP |
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-Related structure data
Related structure data | 2tmvS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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Unit cell |
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Symmetry | Helical symmetry: (Circular symmetry: 1 / Dyad axis: no / N subunits divisor: 49 / Num. of operations: 49 / Rise per n subunits: 69.7 Å / Rotation per n subunits: 1080 °) | ||||||||
Details | THE BASIC REPEAT UNIT OF THE VIRAL HELIX IS 69.7 ANGSTROMS IN LENGTH WITH 49 SUBUNITS IN 3 HELICAL TURNS. |
-Components
#1: RNA chain | Mass: 958.660 Da / Num. of mol.: 1 / Fragment: GAA / Source method: isolated from a natural source / Source: (natural) Ribgrass mosaic virus / Genus: Tobamovirus |
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#2: Protein | Mass: 17552.461 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Ribgrass mosaic virus / Genus: Tobamovirus / References: UniProt: P03580 |
-Experimental details
-Experiment
Experiment | Method: FIBER DIFFRACTION |
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-Sample preparation
Crystal grow | pH: 7.2 / Details: pH 7.2 |
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Crystal grow | *PLUS |
-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ROTATING ANODE / Type: ELLIOT GX-6 / Wavelength: 1.5418 |
Detector | Type: KODAK FILM / Detector: FILM / Date: Oct 1, 1990 / Details: MIRRORS |
Radiation | Monochromatic (M) / Laue (L): M |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→50 Å / Num. obs: 6045 / % possible obs: 91.2 % / Redundancy: 4 % |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 2TMV Resolution: 2.9→10 Å / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 2.9→10 Å
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Software | *PLUS Name: FXPLOR / Classification: refinement | ||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.095 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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