[English] 日本語
Yorodumi- PDB-1r69: STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF PHAGE 434 REPRESSOR AT ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1r69 | ||||||
---|---|---|---|---|---|---|---|
Title | STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF PHAGE 434 REPRESSOR AT 2.0 ANGSTROMS RESOLUTION | ||||||
Components | REPRESSOR PROTEIN CI | ||||||
Keywords | GENE REGULATING PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Phage 434 (virus) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2 Å | ||||||
Authors | Mondragon, A. / Subbiah, S. / Alamo, S.C. / Drottar, M. / Harrison, S.C. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1989 Title: Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolution. Authors: Mondragon, A. / Subbiah, S. / Almo, S.C. / Drottar, M. / Harrison, S.C. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1r69.cif.gz | 22.4 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1r69.ent.gz | 14.7 KB | Display | PDB format |
PDBx/mmJSON format | 1r69.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1r69_validation.pdf.gz | 357.4 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 1r69_full_validation.pdf.gz | 358.8 KB | Display | |
Data in XML | 1r69_validation.xml.gz | 3 KB | Display | |
Data in CIF | 1r69_validation.cif.gz | 4.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/r6/1r69 ftp://data.pdbj.org/pub/pdb/validation_reports/r6/1r69 | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-Components
#1: Protein | Mass: 7560.542 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Phage 434 (virus) / Genus: Lambda-like viruses / Species: Enterobacteria phage lambda / References: UniProt: P16117 |
---|---|
#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 1.81 Å3/Da / Density % sol: 32.17 % |
---|---|
Crystal grow | *PLUS Method: vapor diffusion, hanging drop / PH range low: 10.5 / PH range high: 10 |
Components of the solutions | *PLUS Conc.: 1.45 M / Common name: potassium citrate |
-Data collection
Radiation | Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.9 Å / Num. obs: 4524 / Num. measured all: 7112 / Rmerge(I) obs: 0.116 |
-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor obs: 0.193 / Highest resolution: 2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 5 Å / Num. reflection obs: 3298 / Highest resolution: 2 Å / Rfactor obs: 0.193 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |