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- PDB-1qw2: Crystal Structure of a Protein of Unknown Function TA1206 from Th... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1qw2 | ||||||
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Title | Crystal Structure of a Protein of Unknown Function TA1206 from Thermoplasma acidophilum | ||||||
![]() | conserved hypothetical protein TA1206 | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / Beta/Alpha / Antiparallel beta sandwich / PSI / Protein Structure Initiative / Midwest Center for Structural Genomics / MCSG | ||||||
Function / homology | Hypothetical protein Ta1206 fold / Hypothetical protein YunC / Protein of unknown function DUF1805 / Hypothetical protein YunC superfamily / Domain of unknown function (DUF1805) / 2-Layer Sandwich / Alpha Beta / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Savchenko, A. / Evdokimova, E. / Kudrytska, M. / Edwards, A.E. / Christendat, D. / Midwest Center for Structural Genomics (MCSG) | ||||||
![]() | ![]() Title: Crystal Structure of a Hypothetical Protein "TA1206" from Thermoplasma acidophilum Authors: Savchenko, A. / Evdokimova, E. / Kudrytska, M. / Edwards, A.E. / Christendat, D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 29.3 KB | Display | ![]() |
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PDB format | ![]() | 22.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 357.1 KB | Display | ![]() |
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Full document | ![]() | 358 KB | Display | |
Data in XML | ![]() | 3.5 KB | Display | |
Data in CIF | ![]() | 5.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11365.349 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.08 Å3/Da / Density % sol: 40.84 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5.8 Details: 0.2M Magnesium Nitrate, 30% PEG 3350, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: CUSTOM-MADE / Detector: CCD / Date: Mar 6, 2003 |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.5→50 Å / Num. obs: 24601 / % possible obs: 83.7 % / Observed criterion σ(I): 2782 / Redundancy: 7.4 % / Biso Wilson estimate: 13.8 Å2 / Rmerge(I) obs: 0.069 / Rsym value: 0.059 / Net I/σ(I): 35.8 |
Reflection shell | Resolution: 1.5→1.59 Å / Redundancy: 7 % / Rmerge(I) obs: 0.248 / Mean I/σ(I) obs: 4 / Num. unique all: 2456 / Rsym value: 0.224 / % possible all: 52.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 48.0536 Å2 / ksol: 0.412554 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 19.9 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.5→29.22 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.5→1.59 Å / Rfactor Rfree error: 0.022 / Total num. of bins used: 6
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Xplor file |
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