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- PDB-1q46: crystal structure of the eIF2 alpha subunit from saccharomyces ce... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1q46 | ||||||
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Title | crystal structure of the eIF2 alpha subunit from saccharomyces cerevisia | ||||||
![]() | translation initiation factor 2 alpha subunit | ||||||
![]() | TRANSLATION / initiation factor / eIF2 / phosphorylation site | ||||||
Function / homology | ![]() Cellular response to mitochondrial stress / Recycling of eIF2:GDP / ABC-family proteins mediated transport / eukaryotic translation initiation factor 2 complex / multi-eIF complex / formation of translation preinitiation complex / eukaryotic 48S preinitiation complex / Formation of the ternary complex, and subsequently, the 43S complex / Translation initiation complex formation / Ribosomal scanning and start codon recognition ...Cellular response to mitochondrial stress / Recycling of eIF2:GDP / ABC-family proteins mediated transport / eukaryotic translation initiation factor 2 complex / multi-eIF complex / formation of translation preinitiation complex / eukaryotic 48S preinitiation complex / Formation of the ternary complex, and subsequently, the 43S complex / Translation initiation complex formation / Ribosomal scanning and start codon recognition / L13a-mediated translational silencing of Ceruloplasmin expression / translational initiation / translation initiation factor activity / cytoplasmic stress granule / ribosome binding / ribosome / RNA binding / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Dhaliwal, S. / Hoffman, D.W. | ||||||
![]() | ![]() Title: The crystal structure of the N-terminal region of the alpha subunit of translation initiation factor 2 (eIF2alpha) from Saccharomyces cerevisiae provides a view of the loop containing serine ...Title: The crystal structure of the N-terminal region of the alpha subunit of translation initiation factor 2 (eIF2alpha) from Saccharomyces cerevisiae provides a view of the loop containing serine 51, the target of the eIF2alpha-specific kinases. Authors: Dhaliwal, S. / Hoffman, D.W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 45.6 KB | Display | ![]() |
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PDB format | ![]() | 33.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 422.4 KB | Display | ![]() |
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Full document | ![]() | 427.8 KB | Display | |
Data in XML | ![]() | 8.9 KB | Display | |
Data in CIF | ![]() | 10.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 20597.834 Da / Num. of mol.: 1 / Fragment: N-terminal two thirds of eIF2a / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.35 Å3/Da / Density % sol: 71.75 % | |||||||||||||||
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.6 Details: 0.1 M sodium acetate (pH=4.6), 1.8-2.5 M sodium formate, VAPOR DIFFUSION, HANGING DROP, temperature 293K | |||||||||||||||
Crystal grow | *PLUS Method: unknown | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Mar 20, 2003 / Details: osmium mirror |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | Resolution: 2.86→20 Å / Num. all: 8830 / Num. obs: 8830 / % possible obs: 99.8 % / Observed criterion σ(F): 2 |
Reflection shell | Resolution: 2.86→2.96 Å / Mean I/σ(I) obs: 1.3 / Rsym value: 0.583 / % possible all: 99.9 |
Reflection | *PLUS Lowest resolution: 20 Å / Num. obs: 9935 / % possible obs: 99.5 % / Redundancy: 7.78 % / Num. measured all: 77383 / Rmerge(I) obs: 0.077 |
Reflection shell | *PLUS Rmerge(I) obs: 0.583 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: human eIF2 alpha subunit Resolution: 2.86→20 Å / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 2.86→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.86→2.96 Å | ||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 20 Å / Rfactor Rfree: 0.243 / Rfactor Rwork: 0.222 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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