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- PDB-1pz1: Structure of NADPH-dependent family 11 aldo-keto reductase AKR11B... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1pz1 | ||||||
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Title | Structure of NADPH-dependent family 11 aldo-keto reductase AKR11B(holo) | ||||||
![]() | General stress protein 69 | ||||||
![]() | OXIDOREDUCTASE / beta-alpha barrel / aldo-keto reductase / TIM barrel | ||||||
Function / homology | ![]() Oxidoreductases; Acting on the CH-OH group of donors; With NAD+ or NADP+ as acceptor / oxidoreductase activity Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ehrensberger, A.H. / Wilson, D.K. | ||||||
![]() | ![]() Title: Structural and Catalytic Diversity in the Two Family 11 Aldo-keto Reductases Authors: Ehrensberger, A.H. / Wilson, D.K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 148.1 KB | Display | ![]() |
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PDB format | ![]() | 123.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 979 KB | Display | ![]() |
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Full document | ![]() | 992.8 KB | Display | |
Data in XML | ![]() | 31.2 KB | Display | |
Data in CIF | ![]() | 44.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Details | The biological unit consists of a monomer. Each asymmetric units consists of two biological units. |
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Components
#1: Protein | Mass: 37957.617 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.69 Å3/Da / Density % sol: 54.27 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, hanging drop / pH: 7.74 Details: PEG 8000, sodium acetate, imidazole, pH 7.74, VAPOR DIFFUSION, HANGING DROP, temperature 277K | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 4 ℃ / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jan 21, 2003 / Details: double mirror | ||||||||||||
Radiation | Monochromator: Double crystal / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.2→100 Å / Num. all: 38524 / Num. obs: 36239 / % possible obs: 94.07 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 2 / Rmerge(I) obs: 0.066 / Net I/σ(I): 15.49 | ||||||||||||
Reflection shell | Resolution: 2.2→2.28 Å / Rmerge(I) obs: 0.209 / Mean I/σ(I) obs: 5.02 / % possible all: 88.2 | ||||||||||||
Reflection | *PLUS Lowest resolution: 100 Å / Num. obs: 37796 / % possible obs: 98.4 % / Num. measured all: 134257 | ||||||||||||
Reflection shell | *PLUS Highest resolution: 2.2 Å / % possible obs: 88.2 % |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 2.2→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.2→2.28 Å / % reflection obs: 88.2 % | |||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 30 Å | |||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||
Displacement parameters | *PLUS |