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Yorodumi- PDB-1ptf: THE 1.6 ANGSTROMS STRUCTURE OF HISTIDINE-CONTAINING PHOSPHOTRANSF... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ptf | ||||||
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Title | THE 1.6 ANGSTROMS STRUCTURE OF HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN HPR FROM STREPTOCOCCUS FAECALIS | ||||||
Components | HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR | ||||||
Keywords | PHOSPHOTRANSFERASE | ||||||
Function / homology | Function and homology information phosphoenolpyruvate-dependent sugar phosphotransferase system / cytoplasm Similarity search - Function | ||||||
Biological species | Enterococcus faecalis (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.6 Å | ||||||
Authors | Jia, Z. / Quail, W. / Delbaere, L. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1994 Title: The 1.6 A structure of histidine-containing phosphotransfer protein HPr from Streptococcus faecalis. Authors: Jia, Z. / Vandonselaar, M. / Hengstenberg, W. / Quail, J.W. / Delbaere, L.T. #1: Journal: Nature / Year: 1993 Title: Active-Centre Torsion-Angle Strain Revealed in the 1.6 Angstroms Resolution Structure of the Histidine-Containing Phosphocarrier Protein Hpr Authors: Jia, Z. / Vandonselaar, M. / Quail, J.W. / Delbaere, L.T.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ptf.cif.gz | 28.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ptf.ent.gz | 19.2 KB | Display | PDB format |
PDBx/mmJSON format | 1ptf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ptf_validation.pdf.gz | 359.8 KB | Display | wwPDB validaton report |
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Full document | 1ptf_full_validation.pdf.gz | 359.9 KB | Display | |
Data in XML | 1ptf_validation.xml.gz | 3.2 KB | Display | |
Data in CIF | 1ptf_validation.cif.gz | 4.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pt/1ptf ftp://data.pdbj.org/pub/pdb/validation_reports/pt/1ptf | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 9330.601 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Enterococcus faecalis (bacteria) / References: UniProt: P07515 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.95 Å3/Da / Density % sol: 36.89 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 11 ℃ / pH: 5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.6 Å / Num. obs: 9587 / % possible obs: 95 % / Num. measured all: 88281 / Rmerge(I) obs: 0.061 |
-Processing
Software |
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Refinement | Resolution: 1.6→8 Å / σ(F): 0 /
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Refinement step | Cycle: LAST / Resolution: 1.6→8 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 8 Å / Num. reflection all: 9481 / σ(F): 0 / Rfactor all: 0.156 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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