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Yorodumi- PDB-1pmy: REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM E... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1pmy | ||||||
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Title | REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM EXTORQUENS AM1 AT 1.5 ANGSTROMS RESOLUTION | ||||||
Components | PSEUDOAZURIN | ||||||
Keywords | ELECTRON TRANSFER(CUPROPROTEIN) | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Methylobacterium extorquens (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.5 Å | ||||||
Authors | Inoue, T. / Kai, Y. / Harada, S. / Kasai, N. / Ohshiro, Y. / Suzuki, S. / Kohzuma, T. / Tobari, J. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1994 Title: Refined crystal structure of pseudoazurin from Methylobacterium extorquens AM1 at 1.5 A resolution. Authors: Inoue, T. / Kai, Y. / Harada, S. / Kasai, N. / Ohshiro, Y. / Suzuki, S. / Kohzuma, T. / Tobari, J. #1: Journal: J.Mol.Biol. / Year: 1991 Title: Preliminary Crystallographic Study of a Pseudoazurin from Methylotrophic Bacterium, Methylobacterium Extorquens Am1 Authors: Inoue, T. / Kai, Y. / Harada, S. / Kasai, N. / Suzuki, S. / Kohzuma, T. / Tobari, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1pmy.cif.gz | 38.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1pmy.ent.gz | 25.9 KB | Display | PDB format |
PDBx/mmJSON format | 1pmy.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1pmy_validation.pdf.gz | 388.6 KB | Display | wwPDB validaton report |
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Full document | 1pmy_full_validation.pdf.gz | 392.1 KB | Display | |
Data in XML | 1pmy_validation.xml.gz | 5.1 KB | Display | |
Data in CIF | 1pmy_validation.cif.gz | 7.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pm/1pmy ftp://data.pdbj.org/pub/pdb/validation_reports/pm/1pmy | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 20 |
-Components
#1: Protein | Mass: 13410.594 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Methylobacterium extorquens (bacteria) / References: UniProt: P04171 |
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#2: Chemical | ChemComp-CU / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.18 Å3/Da / Density % sol: 43.57 % | ||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 8 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.2 Å / Lowest resolution: 15 Å / Num. obs: 25154 / Num. measured all: 94051 / Rmerge(I) obs: 0.087 |
Reflection shell | *PLUS Highest resolution: 1.2 Å / Lowest resolution: 3 Å / Num. measured obs: 50881 / Rmerge(I) obs: 0.039 |
-Processing
Software |
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Refinement | Resolution: 1.5→8 Å / σ(F): 3 /
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Refinement step | Cycle: LAST / Resolution: 1.5→8 Å
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Refine LS restraints |
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Refinement | *PLUS Rfactor obs: 0.199 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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