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- PDB-1oxy: CRYSTALLOGRAPHIC ANALYSIS OF OXYGENATED AND DEOXYGENATED STATES O... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1oxy | ||||||
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Title | CRYSTALLOGRAPHIC ANALYSIS OF OXYGENATED AND DEOXYGENATED STATES OF ARTHROPOD HEMOCYANIN SHOWS UNUSUAL DIFFERENCES | ||||||
![]() | HEMOCYANIN (SUBUNIT TYPE II) | ||||||
![]() | OXYGEN TRANSPORT / HEMOCYANIN / COPPER PROTEIN | ||||||
Function / homology | ![]() chloride ion binding / oxygen transport / oxygen carrier activity / oxidoreductase activity / copper ion binding / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Ton-that, H. / Magnus, K. | ||||||
![]() | ![]() Title: Crystallographic analysis of oxygenated and deoxygenated states of arthropod hemocyanin shows unusual differences. Authors: Magnus, K.A. / Hazes, B. / Ton-That, H. / Bonaventura, C. / Bonaventura, J. / Hol, W.G. #1: ![]() Title: Hexamers of Subunit II from Limulus Hemocyanin (A 48mer) Have the Same Quaternary Structure as Whole Panulirus Hemocyanin Molecules Authors: Magnus, K.A. / Lattman, E.E. / Volbeda, A. / Hol, W.G.L. #2: ![]() Title: Crystals of a Functional 70,000 Molecular Weight Subunit of Hemocyanin from Limulus Polyphemus Authors: Magnus, K.A. / Love, W.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 137.1 KB | Display | ![]() |
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PDB format | ![]() | 105.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 377.4 KB | Display | ![]() |
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Full document | ![]() | 392 KB | Display | |
Data in XML | ![]() | 13.6 KB | Display | |
Data in CIF | ![]() | 22.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: PHE 388 - PRO 389 OMEGA = 218.97 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 2: CIS PROLINE - PRO 599 |
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Components
#1: Protein | Mass: 72657.555 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() References: UniProt: P04253 | ||||
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#2: Chemical | #3: Chemical | ChemComp-OXY / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.6 Å3/Da / Density % sol: 52.7 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 6.2 / Method: unknown | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Num. obs: 32972 / % possible obs: 81 % / Observed criterion σ(I): 2 |
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Processing
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Refinement | Resolution: 2.4→6 Å / σ(F): 2 /
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Displacement parameters | Biso mean: 27.37 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.4→6 Å
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Refine LS restraints |
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