+Open data
-Basic information
Entry | Database: PDB / ID: 1oul | ||||||
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Title | Structure of the AAA+ protease delivery protein SspB | ||||||
Components | Stringent starvation protein B homolog | ||||||
Keywords | TRANSPORT PROTEIN / ssrA peptide binding protein / homodimer | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Haemophilus influenzae (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.2 Å | ||||||
Authors | Levchenko, I. / Grant, R.A. / Wah, D.A. / Sauer, R.T. / Baker, T.A. | ||||||
Citation | Journal: Mol.Cell / Year: 2003 Title: Structure of a delivery protein for an AAA+ protease in complex with a peptide degradation tag Authors: Levchenko, I. / Grant, R.A. / Wah, D.A. / Sauer, R.T. / Baker, T.A. #1: Journal: Science / Year: 2000 Title: A specificity-enhancing factor for the ClpXP degradation machine Authors: Levchenko, I. / Siedel, M. / Sauer, R.T. / Baker, T.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1oul.cif.gz | 57 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1oul.ent.gz | 46.2 KB | Display | PDB format |
PDBx/mmJSON format | 1oul.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ou/1oul ftp://data.pdbj.org/pub/pdb/validation_reports/ou/1oul | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Details | the biological homodimers consists of chains A and B together |
-Components
#1: Protein | Mass: 14801.002 Da / Num. of mol.: 2 / Fragment: residues 1-129 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Haemophilus influenzae (bacteria) / Gene: SSPB / Production host: Escherichia coli (E. coli) / References: UniProt: P45206 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.35 Å3/Da / Density % sol: 63 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 6.3 Details: sodium formate, sodium cacodylate, ammonium sulfate, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 20 ℃ / pH: 5.6 / Method: vapor diffusion, sitting drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 113 K | ||||||||||||
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Diffraction source | Source: SYNCHROTRON / Site: NSLS / Beamline: X4A / Wavelength: 0.97898, 0.97939, 0.96866 | ||||||||||||
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jun 26, 2002 | ||||||||||||
Radiation | Monochromator: two crystal monochromator / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.1→20 Å / Num. all: 23481 / Num. obs: 22666 / % possible obs: 99.9 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Biso Wilson estimate: 36.4 Å2 / Rsym value: 0.092 | ||||||||||||
Reflection shell | Resolution: 2.1→2.17 Å / % possible all: 91.8 |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 2.2→19.72 Å / Rfactor Rfree error: 0.005 / Data cutoff high rms absF: 236909.41 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 2 / Stereochemistry target values: Engh & Huber Details: Reflection count for refinement statistics are approximately twice as large as the scaling reflection count because the refinement statistics do not reflect the merging of Bjvoet pairs
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 43.283 Å2 / ksol: 0.362347 e/Å3 | |||||||||||||||||||||||||
Displacement parameters | Biso mean: 49.5 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.2→19.72 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.2→2.34 Å / Rfactor Rfree error: 0.016 / Total num. of bins used: 6
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Xplor file |
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Refine LS restraints | *PLUS
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