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- PDB-1ohz: Cohesin-Dockerin complex from the cellulosome of Clostridium ther... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1ohz | ||||||
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Title | Cohesin-Dockerin complex from the cellulosome of Clostridium thermocellum | ||||||
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![]() | CELL ADHESION / COHESIN-DOCKERIN COMPLEX / COHESIN / DOCKERIN / CELLULOSOME / CLOSTRIDIUM THERMOCELLUM / CELLULOSE DEGRADATION | ||||||
Function / homology | ![]() cellulosome / cellulose binding / endo-1,4-beta-xylanase activity / endo-1,4-beta-xylanase / xylan catabolic process / cellulose catabolic process / hydrolase activity, hydrolyzing O-glycosyl compounds / cell wall organization / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Carvalho, A.L. / Dias, F.M.V. / Prates, J.A.M. / Ferreira, L.M.A. / Gilbert, H.J. / Davies, G.J. / Romao, M.J. / Fontes, C.M.G.A. | ||||||
![]() | ![]() Title: Cellulosome Assembly Revealed by the Crystal Structure of the Cohesin-Dockerin Complex Authors: Carvalho, A.L. / Dias, F.M.V. / Prates, J.A.M. / Ferreira, L.M.A. / Gilbert, H.J. / Davies, G.J. / Romao, M.J. / Fontes, C.M.G.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 53.2 KB | Display | ![]() |
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PDB format | ![]() | 37.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1anuS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Details | THIS MAY BE THE RESULT OF CRYSTAL PACKING |
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Components
-Protein , 2 types, 2 molecules AB
#1: Protein | Mass: 17027.117 Da / Num. of mol.: 1 / Fragment: RESIDUES 181-340 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Protein | Mass: 6515.437 Da / Num. of mol.: 1 / Fragment: RESIDUES 733-791 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
-Non-polymers , 5 types, 121 molecules ![](data/chem/img/NO3.gif)
![](data/chem/img/EDO.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/EDO.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/HOH.gif)
#3: Chemical | #4: Chemical | ChemComp-EDO / | #5: Chemical | #6: Chemical | ChemComp-CL / | #7: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.32 Å3/Da / Density % sol: 62.97 % | ||||||||||||||||||||||||||||||
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Crystal grow | pH: 7 / Details: pH 7.00 | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: unknown | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.976288 Å / Relative weight: 1 |
Reflection | Resolution: 2.201→17.04 Å / Num. obs: 16170 / % possible obs: 99.8 % / Observed criterion σ(I): 2 / Redundancy: 11.9 % / Rmerge(I) obs: 0.072 / Net I/σ(I): 6.9 |
Reflection shell | Resolution: 2.2→2.32 Å / Redundancy: 12 % / Rmerge(I) obs: 0.309 / Mean I/σ(I) obs: 1.9 / % possible all: 99.8 |
Reflection | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 17.04 Å / Redundancy: 11.9 % / Rmerge(I) obs: 0.072 |
Reflection shell | *PLUS % possible obs: 99.8 % / Redundancy: 12 % / Rmerge(I) obs: 0.309 / Mean I/σ(I) obs: 1.9 |
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Processing
Software |
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1ANU Resolution: 2.2→17 Å / Cross valid method: THROUGHOUT
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Refinement step | Cycle: LAST / Resolution: 2.2→17 Å
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Refinement | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 17 Å / % reflection Rfree: 5 % / Rfactor Rfree: 0.242 / Rfactor Rwork: 0.21 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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