登録情報 | データベース: PDB / ID: 1npe |
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タイトル | Crystal structure of Nidogen/Laminin Complex |
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要素 | - Laminin gamma-1 chain
- nidogen
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キーワード | STRUCTURAL PROTEIN / Glycoprotein / Basement membrane / beta-propeller / EGF-like |
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機能・相同性 | 機能・相同性情報
Laminin interactions / laminin-1 complex / laminin-10 complex / tissue morphogenesis / hair follicle cell proliferation / regulation of basement membrane organization / hemidesmosome assembly / glomerular basement membrane development / laminin-1 binding / glycosphingolipid binding ...Laminin interactions / laminin-1 complex / laminin-10 complex / tissue morphogenesis / hair follicle cell proliferation / regulation of basement membrane organization / hemidesmosome assembly / glomerular basement membrane development / laminin-1 binding / glycosphingolipid binding / positive regulation of integrin-mediated signaling pathway / Wnt receptor activity / Degradation of the extracellular matrix / tissue development / Wnt-protein binding / hair cell differentiation / protein complex involved in cell-matrix adhesion / extracellular matrix binding / positive regulation of cell-substrate adhesion / proteoglycan binding / extracellular matrix structural constituent / hair follicle morphogenesis / positive regulation of muscle cell differentiation / positive regulation of cell adhesion / basement membrane / extracellular matrix disassembly / canonical Wnt signaling pathway / synaptic cleft / collagen binding / extracellular matrix / extracellular matrix organization / cell-matrix adhesion / axon guidance / cell periphery / animal organ morphogenesis / neuromuscular junction / neuron projection development / cell migration / chromatin organization / gene expression / protein-containing complex assembly / collagen-containing extracellular matrix / cell adhesion / calcium ion binding / extracellular region / plasma membrane類似検索 - 分子機能 NIDO domain / G2 nidogen/fibulin G2F / Nidogen-like / G2F domain / Nidogen G2 beta-barrel domain profile. / NIDO domain profile. / Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins. / G2 nidogen domain and fibulin / Laminin IV / Laminin B (Domain IV) ...NIDO domain / G2 nidogen/fibulin G2F / Nidogen-like / G2F domain / Nidogen G2 beta-barrel domain profile. / NIDO domain profile. / Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins. / G2 nidogen domain and fibulin / Laminin IV / Laminin B (Domain IV) / Laminin IV type A domain profile. / Laminin B domain / : / Laminin, N-terminal / Laminin N-terminal (Domain VI) / Laminin N-terminal domain profile. / Laminin N-terminal domain (domain VI) / EGF domain / EGF domain / : / Thyroglobulin type-1 repeat signature. / Laminin-type EGF-like (LE) domain profile. / Thyroglobulin type-1 / Thyroglobulin type-1 superfamily / Thyroglobulin type-1 repeat / Laminin-type EGF-like (LE) domain signature. / Thyroglobulin type-1 domain profile. / Laminin-type epidermal growth factor-like domai / Thyroglobulin type I repeats. / Laminin EGF domain / Complement Clr-like EGF domain / Laminin-type EGF domain / Complement Clr-like EGF-like / TolB, C-terminal domain / Low-density lipoprotein receptor repeat class B / LDL-receptor class B (LDLRB) repeat profile. / LDLR class B repeat / Low-density lipoprotein-receptor YWTD domain / : / Calcium-binding EGF domain / Six-bladed beta-propeller, TolB-like / Green fluorescent protein / Laminin / Coagulation Factor Xa inhibitory site / Laminin / EGF-type aspartate/asparagine hydroxylation site / 6 Propeller / Neuraminidase / EGF-like calcium-binding, conserved site / Calcium-binding EGF-like domain signature. / Aspartic acid and asparagine hydroxylation site. / EGF-like calcium-binding domain / Calcium-binding EGF-like domain / Growth factor receptor cysteine-rich domain superfamily / Epidermal growth factor-like domain. / EGF-like domain profile. / EGF-like domain signature 2. / EGF-like domain signature 1. / EGF-like domain / Ribbon / Mainly Beta類似検索 - ドメイン・相同性 |
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生物種 | ![](img/tx_mammal.gif) Mus musculus (ハツカネズミ) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.3 Å |
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データ登録者 | Takagi, J. / Yang, Y.T. / Liu, J.-H. / Wang, J.-H. / Springer, T.A. |
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引用 | ジャーナル: Nature / 年: 2003 タイトル: Complex between nidogen and laminin fragments reveals a paradigmatic beta-propeller interface 著者: Takagi, J. / Yang, Y.T. / Liu, J.-H. / Wang, J.-H. / Springer, T.A. |
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履歴 | 登録 | 2003年1月17日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2003年8月12日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2008年4月29日 | Group: Version format compliance |
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改定 1.2 | 2011年7月13日 | Group: Version format compliance |
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改定 1.3 | 2023年8月16日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr1_symmetry / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.ptnr3_symmetry / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr1_symmetry / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn.ptnr2_symmetry / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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