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Yorodumi- PDB-1mbs: X-RAY CRYSTALLOGRAPHIC STUDIES OF SEAL MYOGLOBIN. THE MOLECULE AT... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1mbs | ||||||
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Title | X-RAY CRYSTALLOGRAPHIC STUDIES OF SEAL MYOGLOBIN. THE MOLECULE AT 2.5 ANGSTROMS RESOLUTION | ||||||
Components | MYOGLOBIN | ||||||
Keywords | OXYGEN TRANSPORT | ||||||
Function / homology | Function and homology information oxygen carrier activity / oxygen binding / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | Phoca vitulina (harbor seal) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.5 Å | ||||||
Authors | Scouloudi, H. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1978 Title: X-ray crystallographic studies of seal myoglobin. The molecule at 2.5 A resolution. Authors: Scouloudi, H. / Baker, E.N. #1: Journal: J.Mol.Biol. / Year: 1978 Title: A Preliminary Comparison of Metmyoglobin Molecules from Seal and Sperm Whale Authors: Scouloudi, H. #2: Journal: J.Mol.Biol. / Year: 1977 Title: Structure of Myoglobin Refined at 2.0 Angstroms. I.Crystallographic Refinement of Metmyoglobin from Sperm Whale Authors: Takano, T. #3: Journal: Prog.Stereochem. / Year: 1969 Title: Stereochemistry of the Protein Myoglobin Authors: Watson, H.C. #4: Journal: J.Biol.Chem. / Year: 1969 Title: Comparison of Myoglobins from Harbor Seal, Porpoise and Sperm Whale. V. The Complete Amino Acid Sequences of Harbor Seal and Propoise Myoglobins Authors: Bradshaw, R.A. / Gurd, F.R.N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mbs.cif.gz | 41.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mbs.ent.gz | 25.5 KB | Display | PDB format |
PDBx/mmJSON format | 1mbs.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mb/1mbs ftp://data.pdbj.org/pub/pdb/validation_reports/mb/1mbs | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: IN RESIDUE LYS 147 THE ORIENTATION OF THE SIDE CHAIN FROM ATOM CG IS DOUBTFUL. 2: THE ORIENTATION OF THE LAST THREE RESIDUES (PHE 151, HIS 152, GLY 153) IS UNCERTAIN. |
-Components
#1: Protein | Mass: 17333.965 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Phoca vitulina (harbor seal) / References: UniProt: P02162, UniProt: P68080*PLUS |
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#2: Chemical | ChemComp-HEM / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.57 Å3/Da / Density % sol: 52.12 % |
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Crystal grow | *PLUS Method: otherDetails: Scouloudi, H., (1960) Proc. Roy. Soc. ser. A, 258, 181., Scouloudi, H., (1969) J. Mol. Biol., 40, 353. |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
-Processing
Refinement | Highest resolution: 2.5 Å Details: AUTHORS MAINTAIN THAT THE ORIENTATION OF THE LAST THREE RESIDUES (PHE 151, HIS 152, GLY 153) IS UNCERTAIN. ALSO, IN RESIDUE LYS 147 THE ORIENTATION OF THE SIDE CHAIN FROM ATOM CG IS DOUBTFUL. | ||||||||||||
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Refinement step | Cycle: LAST / Highest resolution: 2.5 Å
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