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Open data
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Basic information
Entry | Database: PDB / ID: 1yog | ||||||
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Title | COBALT MYOGLOBIN (DEOXY) | ||||||
![]() | MYOGLOBIN![]() | ||||||
![]() | ![]() ![]() ![]() ![]() | ||||||
Function / homology | ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Brucker, E.A. / Phillips Jr., G.N. | ||||||
![]() | ![]() Title: High resolution crystal structures of the deoxy, oxy, and aquomet forms of cobalt myoglobin. Authors: Brucker, E.A. / Olson, J.S. / Phillips Jr., G.N. / Dou, Y. / Ikeda-Saito, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 40.7 KB | Display | ![]() |
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PDB format | ![]() | 31.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 332.7 KB | Display | ![]() |
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Full document | ![]() | 338.5 KB | Display | |
Data in XML | ![]() | 5.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | ![]() Mass: 17234.951 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: RECONSTITUTED WITH COBALT PROTOPORPHYRIN IX (DEOXY) Source: (natural) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / ![]() |
#3: Chemical | ChemComp-COH / |
#4: Water | ChemComp-HOH / ![]() |
Nonpolymer details | THIS STRUCTURE HAS ONE DIFFERENCE RELATIVE TO THE NATIVE SPERM WHALE PROTEIN: THE HEME UNIT (IRON ...THIS STRUCTURE HAS ONE DIFFERENCE |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.94 Å3/Da / Density % sol: 36.45 % | |||||||||||||||
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Crystal grow![]() | *PLUS Temperature: 17 ℃ / Method: batch method | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 295 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.65→30 Å / Num. obs: 62314 / % possible obs: 81.1 % / Observed criterion σ(I): 0 / Rmerge(I) obs: 0.101 |
Reflection | *PLUS Num. obs: 12618 / Num. measured all: 62314 |
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Processing
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Refinement | Resolution: 1.65→5 Å / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 1.65→5 Å
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Refine LS restraints |
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Xplor file |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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