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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 1lcc | ||||||
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タイトル | STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS | ||||||
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![]() | GENE REGULATION/DNA / DNA / HALF-OPERATOR / LAC OPERATOR / LAC REPRESSOR / HEADPIECE / GENE REGULATION-DNA COMPLEX | ||||||
機能・相同性 | ![]() DNA-binding transcription repressor activity / cis-regulatory region sequence-specific DNA binding / transcription cis-regulatory region binding / DNA-binding transcription factor activity / negative regulation of DNA-templated transcription / regulation of DNA-templated transcription / identical protein binding / cytosol 類似検索 - 分子機能 | ||||||
生物種 | ![]() ![]() | ||||||
手法 | 溶液NMR | ||||||
![]() | Chuprina, V.P. / Rullmann, J.A.C. / Lamerichs, R.M.J.N. / Van Boom, J.H. / Boelens, R. / Kaptein, R. | ||||||
![]() | ![]() タイトル: Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics. 著者: Chuprina, V.P. / Rullmann, J.A. / Lamerichs, R.M. / van Boom, J.H. / Boelens, R. / Kaptein, R. #1: ![]() タイトル: Assignment of the 1H-NMR Spectrum of a Lac Repressor Headpiece-Operator Complex in H2O and Identification of Noes. Consequences for Protein-DNA Interaction 著者: Lamerichs, R.M.J.N. / Boelens, R. / Van Der Marel, G.A. / Van Boom, J.H. / Kaptein, R. #2: ![]() タイトル: Two-Dimensional NMR Study of a Protein-DNA Complex. Lac Repressor Headpiece-Operator Interaction 著者: Kaptein, R. / Lamerichs, R.M.J.N. / Boelens, R. / Rullmann, J.A.C. #3: ![]() タイトル: 1H NMR Study of a Complex between the Lac Repressor Headpiece and a 22 Base Pair Symmetric Lac Operator 著者: Lamerichs, R.M.J.N. / Boelens, R. / Van Der Marel, G.A. / Van Boom, J.H. / Kaptein, R. / Buck, F. / Fera, B. / Rueterjans, H. #4: ![]() タイトル: NMR Based Docking Studies of Lac Repressor Headpiece on a Lac Operator Fragment 著者: Rullmann, J.A.C. / Boelens, R. / Kaptein, R. #5: ![]() タイトル: The Interaction of Lac Repressor Headpiece with its Operator: An NMR View 著者: Boelens, R. / Lamerichs, R.M.J.N. / Rullmann, J.A.C. / Van Boom, J.H. / Kaptein, R. #6: ![]() タイトル: Combined Procedure of Distance Geometry and Restrained Molecular Dynamics Techniques for Protein Structure Determination from Nuclear Magnetic Resonance Data: Application to the DNA ...タイトル: Combined Procedure of Distance Geometry and Restrained Molecular Dynamics Techniques for Protein Structure Determination from Nuclear Magnetic Resonance Data: Application to the DNA Binding Domain of Lac Repressor from Escherichia Coli 著者: De Vlieg, J. / Scheek, R.M. / Van Gunsteren, W.F. / Berendsen, H.J.C. / Kaptein, R. / Thomason, J. #7: ![]() タイトル: A Two-Dimensional NMR Study of the Complex of Lac Repressor Headpiece with a 14 Base Pair Lac Operator Fragment 著者: Boelens, R. / Scheek, R.M. / Lamerichs, R.M.J.N. / De Vlieg, J. / Van Boom, J.H. / Kaptein, R. #8: ![]() タイトル: Complex of Lac Repressor Headpiece with a 14 Base Pair Lac Operator Fragment Studied by Two-Dimensional Nuclear Magnetic Resonance 著者: Boelens, R. / Scheek, R.M. / Van Boom, J.H. / Kaptein, R. #9: ![]() タイトル: Restrained Molecular Dynamics Procedure for Protein Tertiary Structure Determination from NMR Data: A Lac Repressor Headpiece Structure Based on Information on J-Coupling and from ...タイトル: Restrained Molecular Dynamics Procedure for Protein Tertiary Structure Determination from NMR Data: A Lac Repressor Headpiece Structure Based on Information on J-Coupling and from Presence and Absence of Noes 著者: De Vlieg, J. / Boelens, R. / Scheek, R.M. / Kaptein, R. / Van Gunsteren, W.F. | ||||||
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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PDBx/mmCIF形式 | ![]() | 39.8 KB | 表示 | ![]() |
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-検証レポート
文書・要旨 | ![]() | 299.4 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 299.2 KB | 表示 | |
XML形式データ | ![]() | 5.9 KB | 表示 | |
CIF形式データ | ![]() | 7.7 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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NMR アンサンブル |
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要素
#1: DNA鎖 | 分子量: 3413.246 Da / 分子数: 1 / 由来タイプ: 合成 / 詳細: CHEMICALLY SYNTHESIZED / ![]() |
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#2: DNA鎖 | 分子量: 3293.174 Da / 分子数: 1 / 由来タイプ: 合成 / 詳細: CHEMICALLY SYNTHESIZED / ![]() |
#3: タンパク質 | 分子量: 5693.446 Da / 分子数: 1 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() |
#4: 化合物 | ChemComp-NA / |
#5: 水 | ChemComp-HOH / |
-実験情報
-実験
実験 | 手法: 溶液NMR |
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NMR実験の詳細 | Text: THE AVERAGE PAIRWISE RMSD BETWEEN THE FOUR STRUCTURES (EXCLUDING WATER AND IONS) IS 0.9 ANGSTROMS ON BACKBONE ATOMS (EXCLUDING FIRST AND LAST THREE PROTEIN RESIDUES, AND THE FIRST AND LAST BASE ...Text: THE AVERAGE PAIRWISE RMSD BETWEEN THE FOUR STRUCTURES (EXCLUDING WATER AND IONS) IS 0.9 ANGSTROMS ON BACKBONE ATOMS (EXCLUDING FIRST AND LAST THREE PROTEIN RESIDUES, AND THE FIRST AND LAST BASE PAIR) AND 1.4 ANGSTROMS ON ALL ATOMS. THE DATA SETS INCLUDE THOSE WATERS AND IONS FOR WHICH THE DISTANCES TO THE NEAREST NEIGHBOR ATOM IN PROTEIN AS WELL AS IN DNA DO NOT EXCEED 4 ANGSTROMS. |
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試料調製
結晶化 | *PLUS 手法: other / 詳細: NMR |
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解析
NMR software | 名称: GROMOS / 分類: 精密化 |
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NMRアンサンブル | 登録したコンフォーマーの数: 1 |
NMR ensemble rms | Atom type: all atoms / Distance rms dev: 1.4 Å |