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Open data
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Basic information
Entry | Database: PDB / ID: 1kk9 | ||||||
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Title | CRYSTAL STRUCTURE OF E. COLI YCIO | ||||||
![]() | probable translation factor yciO | ||||||
![]() | UNKNOWN FUNCTION / alpha/beta open twisted sheet / Montreal-Kingston Bacterial Structural Genomics Initiative / BSGI / Structural Genomics | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Jia, J. / Lunin, V.V. / Sauve, V. / Huang, L.-W. / Matte, A. / Cygler, M. / Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) | ||||||
![]() | ![]() Title: Crystal structure of the YciO protein from Escherichia coli Authors: Jia, J. / Lunin, V.V. / Sauve, V. / Huang, L.-W. / Matte, A. / Cygler, M. #1: ![]() Title: The structure of the Yrdc gene product from E.coli Authors: Teplova, M. / Tereshko, R. / Sanishvili, A. / Joachimiak, A. / Bushueva, T. / Anderson, W.F. / Egli, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 53.1 KB | Display | ![]() |
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PDB format | ![]() | 40.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 442.7 KB | Display | ![]() |
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Full document | ![]() | 445.9 KB | Display | |
Data in XML | ![]() | 11.5 KB | Display | |
Data in CIF | ![]() | 15.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 25190.631 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.47 Å3/Da / Density % sol: 64.6 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: PEG 3350, MES, magnesium acetate, ethylene glycol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7.5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jul 2, 2001 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.1→50 Å / Num. all: 19133 / Num. obs: 18736 / % possible obs: 99.9 % / Observed criterion σ(F): 0 / Redundancy: 10.7 % / Rsym value: 0.068 / Net I/σ(I): 10.4 | ||||||||||||
Reflection shell | Resolution: 2.1→2.18 Å / Num. unique all: 1869 / Rsym value: 0.422 / % possible all: 100 | ||||||||||||
Reflection | *PLUS Lowest resolution: 50 Å / Num. obs: 19133 / Num. measured all: 205748 / Rmerge(I) obs: 0.068 | ||||||||||||
Reflection shell | *PLUS Highest resolution: 2.1 Å / % possible obs: 99.9 % / Rmerge(I) obs: 0.422 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 2.1→50 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 50 Å / Rfactor Rfree: 0.229 / Rfactor Rwork: 0.211 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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