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Open data
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Basic information
Entry | Database: PDB / ID: 1k7j | ||||||
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Title | Structural Genomics, protein TF1 | ||||||
![]() | Protein yciO | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / yciO / putative translation factor / PSI / Protein Structure Initiative / Midwest Center for Structural Genomics / MCSG | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhang, R. / Dementieva, I. / Thorn, J. / Donnelly, M. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG) | ||||||
![]() | ![]() Title: Structural Genomics, protein TF1 Authors: Zhang, R. / Dementieva, I. / Thorn, J. / Donnelly, M. / Joachimiak, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 54.3 KB | Display | ![]() |
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PDB format | ![]() | 42.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 375.8 KB | Display | ![]() |
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Full document | ![]() | 377.7 KB | Display | |
Data in XML | ![]() | 5.9 KB | Display | |
Data in CIF | ![]() | 9.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 23568.027 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.62 Å3/Da / Density % sol: 53.07 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5 Details: 30% Ammonium sulfate, 0.1M Na citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: SBC-2 / Detector: CCD / Date: Aug 22, 2001 / Details: mirrors | ||||||||||||
Radiation | Monochromator: Si 111 CHANNEL / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.4→50 Å / Num. all: 49767 / Num. obs: 49419 / % possible obs: 99.3 % / Observed criterion σ(F): 4 / Observed criterion σ(I): 2 / Redundancy: 12.57 % / Biso Wilson estimate: 11.1 Å2 / Rmerge(I) obs: 0.084 / Net I/σ(I): 27.03 | ||||||||||||
Reflection shell | Resolution: 1.4→1.45 Å / Redundancy: 4.28 % / Rmerge(I) obs: 0.293 / Mean I/σ(I) obs: 2.63 / Num. unique all: 4679 / % possible all: 95.2 |
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Processing
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Refinement | Method to determine structure: ![]() Details: Used mlhl:maximum likelihood target using amplitudes in CNS
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 45.435 Å2 / ksol: 0.394199 e/Å3 | ||||||||||||||||||||
Displacement parameters | Biso mean: 15.2 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.4→45.84 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.4→1.49 Å / Rfactor Rfree error: 0.009 / Total num. of bins used: 6
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Xplor file |
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