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Yorodumi- PDB-1kbh: Mutual Synergistic Folding in the Interaction Between Nuclear Rec... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1kbh | ||||||
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Title | Mutual Synergistic Folding in the Interaction Between Nuclear Receptor Coactivators CBP and ACTR | ||||||
Components |
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Keywords | TRANSCRIPTION / Nuclear Hormone Receptors / p160 / ACTR / CBP / CREB-binding protein / p300 / coactivator | ||||||
Function / homology | Function and homology information receptor transactivation / cell dedifferentiation / Activation of the TFAP2 (AP-2) family of transcription factors / Regulation of FOXO transcriptional activity by acetylation / TRAF6 mediated IRF7 activation / Nuclear events mediated by NFE2L2 / Attenuation phase / Regulation of gene expression by Hypoxia-inducible Factor / LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production / regulation of stem cell division ...receptor transactivation / cell dedifferentiation / Activation of the TFAP2 (AP-2) family of transcription factors / Regulation of FOXO transcriptional activity by acetylation / TRAF6 mediated IRF7 activation / Nuclear events mediated by NFE2L2 / Attenuation phase / Regulation of gene expression by Hypoxia-inducible Factor / LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production / regulation of stem cell division / Transcriptional and post-translational regulation of MITF-M expression and activity / RUNX1 regulates transcription of genes involved in differentiation of myeloid cells / cAMP response element binding protein binding / Formation of the beta-catenin:TCF transactivating complex / NOTCH1 Intracellular Domain Regulates Transcription / RUNX3 regulates NOTCH signaling / Notch-HLH transcription pathway / positive regulation of cell adhesion molecule production / germ-line stem cell population maintenance / negative regulation of viral process / Regulation of lipid metabolism by PPARalpha / Cytoprotection by HMOX1 / CD209 (DC-SIGN) signaling / Estrogen-dependent gene expression / peptide lactyltransferase (CoA-dependent) activity / outer kinetochore / negative regulation of interferon-beta production / positive regulation of keratinocyte differentiation / histone H3K18 acetyltransferase activity / N-terminal peptidyl-lysine acetylation / histone H3K27 acetyltransferase activity / MRF binding / peroxisome proliferator activated receptor binding / face morphogenesis / nuclear thyroid hormone receptor binding / negative regulation of transcription by RNA polymerase I / peptide-lysine-N-acetyltransferase activity / cellular response to hepatocyte growth factor stimulus / positive regulation of G1/S transition of mitotic cell cycle / positive regulation of dendritic spine development / positive regulation of stem cell population maintenance / RNA polymerase II complex binding / SMAD binding / acetyltransferase activity / behavioral response to cocaine / TFIIB-class transcription factor binding / histone acetyltransferase complex / positive regulation of double-strand break repair via homologous recombination / long-term memory / histone acetyltransferase activity / histone acetyltransferase / cellular response to hormone stimulus / cellular response to estradiol stimulus / Transferases; Acyltransferases; Transferring groups other than aminoacyl groups / nuclear receptor coactivator activity / nuclear receptor binding / RNA polymerase II transcription regulatory region sequence-specific DNA binding / PPARA activates gene expression / positive regulation of DNA-binding transcription factor activity / protein destabilization / MAPK6/MAPK4 signaling / protein modification process / positive regulation of non-canonical NF-kappaB signal transduction / Transcriptional regulation of white adipocyte differentiation / PML body / chromatin DNA binding / RNA polymerase II transcription regulator complex / cellular response to virus / transcription coactivator binding / Activation of anterior HOX genes in hindbrain development during early embryogenesis / rhythmic process / disordered domain specific binding / cellular response to UV / DNA-binding transcription factor binding / transcription regulator complex / Estrogen-dependent gene expression / transcription coactivator activity / RNA polymerase II-specific DNA-binding transcription factor binding / damaged DNA binding / molecular adaptor activity / protein dimerization activity / nuclear body / protein domain specific binding / chromatin binding / positive regulation of gene expression / positive regulation of DNA-templated transcription / chromatin / regulation of DNA-templated transcription / protein-containing complex binding / positive regulation of transcription by RNA polymerase II / protein-containing complex / DNA binding / zinc ion binding / extracellular exosome / nucleoplasm / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) Mus musculus (house mouse) | ||||||
Method | SOLUTION NMR / Dyana, Sane, Amber | ||||||
Authors | Demarest, S.J. / Martinez-Yamout, M. / Chung, J. / Chen, H. / Xu, W. / Dyson, H.J. / Evans, R.M. / Wright, P.E. | ||||||
Citation | Journal: Nature / Year: 2002 Title: Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators. Authors: Demarest, S.J. / Martinez-Yamout, M. / Chung, J. / Chen, H. / Xu, W. / Dyson, H.J. / Evans, R.M. / Wright, P.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1kbh.cif.gz | 642.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1kbh.ent.gz | 535.9 KB | Display | PDB format |
PDBx/mmJSON format | 1kbh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1kbh_validation.pdf.gz | 363.7 KB | Display | wwPDB validaton report |
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Full document | 1kbh_full_validation.pdf.gz | 593.4 KB | Display | |
Data in XML | 1kbh_validation.xml.gz | 30.8 KB | Display | |
Data in CIF | 1kbh_validation.cif.gz | 54.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kb/1kbh ftp://data.pdbj.org/pub/pdb/validation_reports/kb/1kbh | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 5103.564 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: ACTR / Plasmid: pET22b / Production host: Escherichia coli (E. coli) / Strain (production host): BL21-DE3(DNAY) / References: UniProt: Q9Y6Q9 |
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#2: Protein | Mass: 6568.562 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / Gene: CBP / Plasmid: pET22b / Production host: Escherichia coli (E. coli) / Strain (production host): BL21-DE3(DNAY) / References: UniProt: P45481 |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | ||||||||||||||||||||||||||||||
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Radiation wavelength | Relative weight: 1 | ||||||||||||||||||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: Dyana, Sane, Amber / Software ordinal: 1 Details: 200 structures originally calculated using unambiguous restraints in Dyana followed by the addition of ambiguous restraints for simulated annealing of the top 100 Dyana structures in Amber. ...Details: 200 structures originally calculated using unambiguous restraints in Dyana followed by the addition of ambiguous restraints for simulated annealing of the top 100 Dyana structures in Amber. Best 20 structures selected to represent the structure of the ACTR/CBP complex. | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: fewest violations,lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations,structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |