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Yorodumi- PDB-1ju1: Dimer Initiation Sequence of HIV-1Lai Genomic RNA: NMR Solution S... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ju1 | ||||||
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Title | Dimer Initiation Sequence of HIV-1Lai Genomic RNA: NMR Solution Structure of the Extended Duplex | ||||||
Components | HIV-1Lai SL1 | ||||||
Keywords | RNA / HIV / dimer initiation sequence / SL1 / extended duplex / stable dimer | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Method | SOLUTION NMR / simulated annealing, matrix relaxation | ||||||
Authors | Girard, F. / Barbault, F. / Lancelot, G. | ||||||
Citation | Journal: J.Biomol.Struct.Dyn. / Year: 1999 Title: Dimer initiation sequence of HIV-1Lai genomic RNA: NMR solution structure of the extended duplex. Authors: Girard, F. / Barbault, F. / Gouyette, C. / Huynh-Dinh, T. / Paoletti, J. / Lancelot, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ju1.cif.gz | 448.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ju1.ent.gz | 361.7 KB | Display | PDB format |
PDBx/mmJSON format | 1ju1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ju1_validation.pdf.gz | 335.2 KB | Display | wwPDB validaton report |
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Full document | 1ju1_full_validation.pdf.gz | 514.3 KB | Display | |
Data in XML | 1ju1_validation.xml.gz | 39.1 KB | Display | |
Data in CIF | 1ju1_validation.cif.gz | 59.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ju/1ju1 ftp://data.pdbj.org/pub/pdb/validation_reports/ju/1ju1 | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 7417.488 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques |
-Sample preparation
Details |
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Sample conditions |
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-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AMX / Manufacturer: Bruker / Model: AMX / Field strength: 500 MHz |
-Processing
NMR software |
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Refinement | Method: simulated annealing, matrix relaxation / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry, structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 15 / Conformers submitted total number: 15 |