+Open data
-Basic information
Entry | Database: PDB / ID: 1jtj | ||||||
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Title | Solution structure of HIV-1Lai mutated SL1 hairpin | ||||||
Components | HIV-1Lai SL1 | ||||||
Keywords | RNA / HIV / SL1 / hairpin / HIV-1Lai | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Kieken, F. / Arnoult, E. / Barbault, F. / Paquet, F. / Huynh-Dinh, T. / Paoletti, J. / Genest, D. / Lancelot, G. | ||||||
Citation | Journal: EUR.BIOPHYS.J. / Year: 2002 Title: HIV-1(Lai) genomic RNA: combined used of NMR and molecular dynamics simulation for studying the structure and internal dynamics of a mutated SL1 hairpin. Authors: Kieken, F. / Arnoult, E. / Barbault, F. / Paquet, F. / Huynh-Dinh, T. / Paoletti, J. / Genest, D. / Lancelot, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jtj.cif.gz | 279.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jtj.ent.gz | 228.3 KB | Display | PDB format |
PDBx/mmJSON format | 1jtj.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1jtj_validation.pdf.gz | 324.6 KB | Display | wwPDB validaton report |
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Full document | 1jtj_full_validation.pdf.gz | 442.6 KB | Display | |
Data in XML | 1jtj_validation.xml.gz | 18.7 KB | Display | |
Data in CIF | 1jtj_validation.cif.gz | 30.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jt/1jtj ftp://data.pdbj.org/pub/pdb/validation_reports/jt/1jtj | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 7401.488 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AMX / Manufacturer: Bruker / Model: AMX / Field strength: 500 MHz |
-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry,structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 19 / Conformers submitted total number: 19 |