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- PDB-1jf8: X-ray structure of reduced C10S, C15A arsenate reductase from pI258 -
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Open data
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Basic information
Entry | Database: PDB / ID: 1jf8 | ||||||
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Title | X-ray structure of reduced C10S, C15A arsenate reductase from pI258 | ||||||
![]() | arsenate reductase | ||||||
![]() | OXIDOREDUCTASE / PTPase I fold / P-loop / sulfinic acid | ||||||
Function / homology | ![]() arsenate reductase (thioredoxin) / arsenate reductase (thioredoxin) activity / response to arsenic-containing substance / protein tyrosine phosphatase activity / metal ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zegers, I. / Martins, J.C. / Willem, R. / Wyns, L. / Messens, J. | ||||||
![]() | ![]() Title: Arsenate reductase from S. aureus plasmid pI258 is a phosphatase drafted for redox duty. Authors: Zegers, I. / Martins, J.C. / Willem, R. / Wyns, L. / Messens, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 44.8 KB | Display | ![]() |
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PDB format | ![]() | 30.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 448.2 KB | Display | ![]() |
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Full document | ![]() | 448.9 KB | Display | |
Data in XML | ![]() | 10 KB | Display | |
Data in CIF | ![]() | 14.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14783.608 Da / Num. of mol.: 1 / Mutation: C10S,C15A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-BCT / |
#3: Chemical | ChemComp-K / |
#4: Chemical | ChemComp-TRS / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.95 Å3/Da / Density % sol: 36.86 % | |||||||||||||||
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 8 Details: Peg4000, Tris, potassium chloride, sodium arsenite, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K | |||||||||||||||
Crystal grow | *PLUS pH: 8 | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Feb 23, 2000 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.12→18 Å / Num. all: 44496 / Num. obs: 44496 / % possible obs: 98.3 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 6.6 % / Biso Wilson estimate: 9.2 Å2 / Rmerge(I) obs: 0.039 / Net I/σ(I): 20.7 |
Reflection shell | Resolution: 1.12→1.16 Å / Redundancy: 3 % / Rmerge(I) obs: 0.359 / Mean I/σ(I) obs: 2.4 / Num. unique all: 4254 / % possible all: 95.8 |
Reflection | *PLUS Num. measured all: 299466 |
Reflection shell | *PLUS % possible obs: 95.8 % |
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Processing
Software |
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Refinement | Method to determine structure: ![]() Starting model: structure of oxidised pI258 ArsC Resolution: 1.12→18 Å / Isotropic thermal model: isotropic / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh and Huber
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Refinement step | Cycle: LAST / Resolution: 1.12→18 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.12→1.17 Å / Rfactor Rfree error: 0.02
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Software | *PLUS Name: CNS / Classification: refinement | |||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 18 Å / σ(F): 0 / % reflection Rfree: 10 % / Rfactor obs: 0.185 / Rfactor Rfree: 0.218 | |||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: c_angle_deg / Dev ideal: 1.96 | |||||||||||||||||||||||||
LS refinement shell | *PLUS Rfactor Rfree: 0.32 / % reflection Rfree: 10.4 % |