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- PDB-1iqx: CRYSTAL STRUCTURE OF COBALT-SUBSTITUTED AMINE OXIDASE FROM ARTHRO... -
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Basic information
Entry | Database: PDB / ID: 1iqx | ||||||
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Title | CRYSTAL STRUCTURE OF COBALT-SUBSTITUTED AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS | ||||||
![]() | CO(II)-SUBSTITUTED AMINE OXIDASE | ||||||
![]() | OXIDOREDUCTASE / COPPER / AMINE OXIDASE / ARTHROBACTER GLOBIFORMIS / QUINONE COFACTOR / TPQ / COBALT / CO(II) | ||||||
Function / homology | ![]() primary-amine oxidase / aliphatic amine oxidase activity / primary methylamine oxidase activity / amine metabolic process / quinone binding / copper ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kishishita, S. / Okajima, T. / Mure, M. / Kim, M. / Yamaguchi, H. / Hirota, S. / Suzuki, S. / Kuroda, S. / Tanizawa, K. | ||||||
![]() | ![]() Title: Role of Copper Ion in Bacterial Copper Amine Oxidase: Spectroscopic and Crystallographic Studies of Metal-Substituted Enzymes Authors: Kishishita, S. / Okajima, T. / Kim, M. / Yamaguchi, H. / Hirota, S. / Suzuki, S. / Kuroda, S. / Tanizawa, K. / Mure, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 272.6 KB | Display | ![]() |
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PDB format | ![]() | 217 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 445.5 KB | Display | ![]() |
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Full document | ![]() | 457.7 KB | Display | |
Data in XML | ![]() | 54.1 KB | Display | |
Data in CIF | ![]() | 80.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 70752.742 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.99 Å3/Da / Density % sol: 58.91 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 288 K / Method: microdialysis / pH: 6.8 Details: potassium-sodium tartrate, pH 6.8, MICRODIALYSIS, temperature 288K | ||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 16 ℃ | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jun 6, 1999 |
Radiation | Monochromator: Si 111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→10 Å / Num. all: 182954 / Num. obs: 181360 / % possible obs: 99.8 % / Observed criterion σ(F): 1 / Observed criterion σ(I): 3 / Rmerge(I) obs: 0.074 |
Reflection shell | Resolution: 1.8→1.88 Å / % possible all: 99.3 |
Reflection | *PLUS Lowest resolution: 10 Å / Num. obs: 155223 / Num. measured all: 480123 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: HOLO-AGAO Resolution: 2→10 Å / Data cutoff high absF: 1000000 / Data cutoff low absF: 0.001 / Cross valid method: THROUGHOUT / σ(F): 1 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 18 Å2 | |||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→10 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2→2.09 Å
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Xplor file |
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Refinement | *PLUS Lowest resolution: 10 Å / % reflection Rfree: 5 % / Rfactor Rfree: 0.26 | |||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||
Refine LS restraints | *PLUS
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