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Yorodumi- PDB-1iqs: Minimized average structure of MTH1880 from Methanobacterium Ther... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1iqs | ||||||
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Title | Minimized average structure of MTH1880 from Methanobacterium Thermoautotrophicum | ||||||
Components | MTH1880 | ||||||
Keywords | METAL BINDING PROTEIN / alpha-beta / anti-parallel | ||||||
Function / homology | Hypothetical protein MTH1880 / Protein of unknown function DUF749 / Uncharacterised conserved protein UCP005648, calcium-binding / Hypothetical protein MTH1880 / Domain of unknown function (DUF749) / Double Stranded RNA Binding Domain / 2-Layer Sandwich / Alpha Beta / Conserved protein Function and homology information | ||||||
Biological species | Methanothermobacter thermautotrophicus (archaea) | ||||||
Method | SOLUTION NMR / distance geometry simulated annealing, molecular dynamics matrix relaxation torsion angle dynamics | ||||||
Model type details | minimized average | ||||||
Authors | Lee, C.H. / Shin, J. / Bang, E. / Jung, J.W. / Yee, A. / Arrowsmith, C.H. / Lee, W. | ||||||
Citation | Journal: Protein Sci. / Year: 2004 Title: Solution structure of a novel calcium binding protein, MTH1880, from Methanobacterium thermoautotrophicum. Authors: Lee, C.H. / Jung, J.W. / Yee, A. / Arrowsmith, C.H. / Lee, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1iqs.cif.gz | 38.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1iqs.ent.gz | 26.8 KB | Display | PDB format |
PDBx/mmJSON format | 1iqs.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1iqs_validation.pdf.gz | 249.6 KB | Display | wwPDB validaton report |
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Full document | 1iqs_full_validation.pdf.gz | 249.4 KB | Display | |
Data in XML | 1iqs_validation.xml.gz | 3.9 KB | Display | |
Data in CIF | 1iqs_validation.cif.gz | 4.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/iq/1iqs ftp://data.pdbj.org/pub/pdb/validation_reports/iq/1iqs | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 9960.412 Da / Num. of mol.: 1 / Mutation: M1L Source method: isolated from a genetically manipulated source Source: (gene. exp.) Methanothermobacter thermautotrophicus (archaea) Plasmid: pET13b / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) pLysS / References: UniProt: O27908 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined using triple-resonance NMR spectroscopy. |
-Sample preparation
Details |
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Sample conditions | pH: 7.6 / Pressure: ambient / Temperature: 298 K | ||||||||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: distance geometry simulated annealing, molecular dynamics matrix relaxation torsion angle dynamics Software ordinal: 1 Details: the structures are based on a total of 762 restraints, 669 are NOE-derived distance constraints, 39 dihedral angle restraints,54 distance restraints from hydrogen bonds. | ||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: This model is the minimized average structure from 20 structures with the lowest energy Conformers calculated total number: 1 / Conformers submitted total number: 1 |