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Yorodumi- PDB-1ih9: NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to D... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ih9 | ||||||
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Title | NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles | ||||||
Components | ZERVAMICIN IIB | ||||||
Keywords | ANTIBIOTIC / ZREVAMICIN / PEPTAIBOL ANTIBACTERIAL / ANTIFUNGAL / ANTIBIOTIC BENT HELIX | ||||||
Function / homology | Zervamicin IIB / : Function and homology information | ||||||
Biological species | EMERICELLOPSIS SALMOSYNNEMATA (fungus) | ||||||
Method | SOLUTION NMR / SIMULATED ANNELING. ENERGY MINIMISATION. | ||||||
Authors | Shenkarev, Z.O. / Balasheva, T.A. / Efremov, R.G. / Yakimenko, Z.A. / Ovchinnikova, T.V. / Raap, J. / Arseniev, A.S. | ||||||
Citation | Journal: Biophys.J. / Year: 2002 Title: Spatial Structure of Zervamicin Iib Bound to Dpc Micelles: Implications for Voltage-Gating. Authors: Shenkarev, Z.O. / Balashova, T.A. / Efremov, R.G. / Yakimenko, Z.A. / Ovchinnikova, T.V. / Raap, J. / Arseniev, A.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ih9.cif.gz | 89.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ih9.ent.gz | 72.9 KB | Display | PDB format |
PDBx/mmJSON format | 1ih9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ih9_validation.pdf.gz | 356.4 KB | Display | wwPDB validaton report |
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Full document | 1ih9_full_validation.pdf.gz | 438.2 KB | Display | |
Data in XML | 1ih9_validation.xml.gz | 7.6 KB | Display | |
Data in CIF | 1ih9_validation.cif.gz | 11 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ih/1ih9 ftp://data.pdbj.org/pub/pdb/validation_reports/ih/1ih9 | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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NMR ensembles |
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-Components
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES. |
-Sample preparation
Details |
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Sample conditions | Ionic strength: 0 / pH: 6.8 / Pressure: 1ATM ATM / Temperature: 303 K | ||||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian UNITY / Manufacturer: Varian / Model: UNITY / Field strength: 600 MHz |
-Processing
NMR software |
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Refinement | Method: SIMULATED ANNELING. ENERGY MINIMISATION. / Software ordinal: 1 Details: 536 NOESY PEAKS, 174 UPPER CONSTRAINTS 29 ADDITIONAL LOWER CONSTRAINTS 60 ADDITIONAL CONSTRAINTS FOR HYDROGEN BONDS 11 ANGLE CONSTRAINTS | |||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 |