+Open data
-Basic information
Entry | Database: PDB / ID: 1hia | ||||||
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Title | KALLIKREIN COMPLEXED WITH HIRUSTASIN | ||||||
Components |
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Keywords | COMPLEX (PROTEASE/INHIBITOR) / COMPLEX (PROTEASE-INHIBITOR) / TISSUE KALLIKREIN / SERINE PROTEASE / TRYPSIN / PSA / KININ / SERPIN / COMPLEX (PROTEASE-INHIBITOR) complex | ||||||
Function / homology | Function and homology information tissue kallikrein / negative regulation of coagulation / regulation of systemic arterial blood pressure / zymogen activation / secretory granule / serine-type endopeptidase inhibitor activity / heparin binding / serine-type endopeptidase activity / extracellular region Similarity search - Function | ||||||
Biological species | Sus scrofa (pig) Hirudo medicinalis (medicinal leech) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.4 Å | ||||||
Authors | Mittl, P. / Di Marco, S. / Gruetter, M. | ||||||
Citation | Journal: Structure / Year: 1997 Title: A new structural class of serine protease inhibitors revealed by the structure of the hirustasin-kallikrein complex. Authors: Mittl, P.R. / Di Marco, S. / Fendrich, G. / Pohlig, G. / Heim, J. / Sommerhoff, C. / Fritz, H. / Priestle, J.P. / Grutter, M.G. #1: Journal: Structure / Year: 1997 Title: Erratum. A New Structural Class of Serine Protease Inhibitors Revealed by the Structure of the Hirustasin-Kallikrein Complex Authors: Mittl, P.R. / Di Marco, S. / Fendrich, G. / Pohlig, G. / Heim, J. / Sommerhoff, C. / Fritz, H. / Priestle, J.P. / Grutter, M.G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hia.cif.gz | 119.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hia.ent.gz | 97.2 KB | Display | PDB format |
PDBx/mmJSON format | 1hia.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1hia_validation.pdf.gz | 464.2 KB | Display | wwPDB validaton report |
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Full document | 1hia_full_validation.pdf.gz | 474.1 KB | Display | |
Data in XML | 1hia_validation.xml.gz | 26 KB | Display | |
Data in CIF | 1hia_validation.cif.gz | 36.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hi/1hia ftp://data.pdbj.org/pub/pdb/validation_reports/hi/1hia | HTTPS FTP |
-Related structure data
Related structure data | 2pkaS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper:
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-Components
#1: Protein | Mass: 9119.133 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Sus scrofa (pig) / Organ: PANCREAS / References: UniProt: P00752, tissue kallikrein #2: Protein | Mass: 16511.477 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Sus scrofa (pig) / Organ: PANCREAS / References: UniProt: P00752, tissue kallikrein #3: Protein/peptide | Mass: 5200.117 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Hirudo medicinalis (medicinal leech) / Organ: PANCREAS / References: UniProt: P80302 #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 2 |
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-Sample preparation
Crystal | Density Matthews: 2.77 Å3/Da / Density % sol: 56.49 % | ||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion, hanging drop / pH: 5 Details: HANGING DROP, RESERVOIR: 23% PEG2000, 180MM AM2SO4, 3.5% DIOXANE 100 MM SODIUM ACETATE, PH 4.6. DROP: 1:1 RATIO OF HIRUSTASIN:KALLIKREIN IN 20MM TRIS-HCL, PH 8.0, pH 5.0, vapor diffusion - hanging drop PH range: 4.6-8.0 | ||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 8 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 297 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM1A / Wavelength: 0.875 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Nov 1, 1995 |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.875 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→25 Å / Num. obs: 27511 / % possible obs: 97.9 % / Redundancy: 3.5 % / Rsym value: 0.126 / Net I/σ(I): 11.2 |
Reflection shell | Resolution: 2.4→2.45 Å / Redundancy: 3.1 % / Mean I/σ(I) obs: 2.3 / Rsym value: 0.474 / % possible all: 98.6 |
Reflection | *PLUS Num. measured all: 96170 / Rmerge(I) obs: 0.126 |
Reflection shell | *PLUS % possible obs: 98.6 % / Rmerge(I) obs: 0.474 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 2PKA Resolution: 2.4→8 Å / Rfactor Rfree error: 0 / Data cutoff high absF: 10000000 / Data cutoff low absF: 0.001 / Cross valid method: THROUGHOUT Details: N-TERMINAL RESIDUES (I/J 5-23) OF HIRUSTASIN HAVE HIGH B-FACTORS. NCS-RELATED MOLECULES ARE RELATED BY THE SAME ORIENTATION (IDENTITY MATRIX) AND THE FRACTIONAL TRANSLATION VECTOR (1/2, 1/3, ...Details: N-TERMINAL RESIDUES (I/J 5-23) OF HIRUSTASIN HAVE HIGH B-FACTORS. NCS-RELATED MOLECULES ARE RELATED BY THE SAME ORIENTATION (IDENTITY MATRIX) AND THE FRACTIONAL TRANSLATION VECTOR (1/2, 1/3, 1/2). THIS PACKING EXERTS THE EXTINCTION PATTERN K=3N: H+L=2N.
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Displacement parameters | Biso mean: 46.2 Å2
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Refinement step | Cycle: LAST / Resolution: 2.4→8 Å
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Refine LS restraints |
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Xplor file |
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Software | *PLUS Name: X-PLOR / Version: 3.1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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