+
データを開く
-
基本情報
登録情報 | データベース: PDB / ID: 1gnh | ||||||
---|---|---|---|---|---|---|---|
タイトル | HUMAN C-REACTIVE PROTEIN | ||||||
![]() | C-REACTIVE PROTEIN | ||||||
![]() | ACUTE-PHASE PROTEIN / PENTRAXIN / ACUTE-PHASE REACTANT | ||||||
機能・相同性 | ![]() regulation of interleukin-8 production / opsonization / complement component C1q complex binding / low-density lipoprotein particle binding / negative regulation of mononuclear cell proliferation / vasoconstriction / choline binding / Classical antibody-mediated complement activation / low-density lipoprotein particle receptor binding / negative regulation of macrophage derived foam cell differentiation ...regulation of interleukin-8 production / opsonization / complement component C1q complex binding / low-density lipoprotein particle binding / negative regulation of mononuclear cell proliferation / vasoconstriction / choline binding / Classical antibody-mediated complement activation / low-density lipoprotein particle receptor binding / negative regulation of macrophage derived foam cell differentiation / negative regulation of lipid storage / positive regulation of superoxide anion generation / acute-phase response / defense response to Gram-positive bacterium / inflammatory response / innate immune response / calcium ion binding / positive regulation of gene expression / extracellular space / extracellular region / identical protein binding 類似検索 - 分子機能 | ||||||
生物種 | ![]() | ||||||
手法 | ![]() ![]() | ||||||
![]() | Shrive, A.K. / Cheetham, G.M.T. / Holden, D. / Myles, D.A. / Turnell, W.G. / Volanakis, J.E. / Pepys, M.B. / Bloomer, A.C. / Greenhough, T.J. | ||||||
![]() | ![]() タイトル: Three dimensional structure of human C-reactive protein. 著者: Shrive, A.K. / Cheetham, G.M. / Holden, D. / Myles, D.A. / Turnell, W.G. / Volanakis, J.E. / Pepys, M.B. / Bloomer, A.C. / Greenhough, T.J. | ||||||
履歴 |
|
-
構造の表示
構造ビューア | 分子: ![]() ![]() |
---|
-
ダウンロードとリンク
-
ダウンロード
PDBx/mmCIF形式 | ![]() | 392.8 KB | 表示 | ![]() |
---|---|---|---|---|
PDB形式 | ![]() | 335.2 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
文書・要旨 | ![]() | 420.3 KB | 表示 | ![]() |
---|---|---|---|---|
文書・詳細版 | ![]() | 466.2 KB | 表示 | |
XML形式データ | ![]() | 42.2 KB | 表示 | |
CIF形式データ | ![]() | 62.3 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
類似構造データ |
---|
-
リンク
-
集合体
登録構造単位 | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
2 | ![]()
| ||||||||
単位格子 |
|
-
要素
#1: タンパク質 | 分子量: 23068.039 Da / 分子数: 10 / 由来タイプ: 天然 / 由来: (天然) ![]() #2: 化合物 | ChemComp-CA / 構成要素の詳細 | THE SIDE CHAIN OF ASN 61 IN PROTOMERS C AND I (THE PROTOMERS WHERE THE 140 - 150 LOOP FROM D, J, ...THE SIDE CHAIN OF ASN 61 IN PROTOMERS C AND I (THE PROTOMERS WHERE THE 140 - 150 LOOP FROM D, J, RESPECTIVE | 非ポリマーの詳細 | THE SECOND CALCIUM ION (502) IN PROTOMERS A AND B HAS A VERY LOW OCCUPANCY AND DOES NOT REFINE WELL. ...THE SECOND CALCIUM ION (502) IN PROTOMERS A AND B HAS A VERY LOW OCCUPANCY AND DOES NOT REFINE WELL. THUS A 502 AND B 502 HAVE BEEN PLACED, FOLLOWING FULL STRUCTURAL | |
---|
-実験情報
-実験
実験 | 手法: ![]() |
---|
-
試料調製
結晶 | マシュー密度: 4.1 Å3/Da / 溶媒含有率: 65 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
結晶化 | *PLUS 温度: 40 ℃ / 手法: gel | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
溶液の組成 | *PLUS
|
-データ収集
放射光源 | 由来: ![]() ![]() ![]() |
---|---|
検出器 | タイプ: FILM / 検出器: FILM / 日付: 1988年3月1日 |
放射 | 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 0.901 Å / 相対比: 1 |
反射 | 解像度: 3→20 Å / Num. obs: 57243 / % possible obs: 74 % / Observed criterion σ(I): 0 / 冗長度: 1.5 % / Rmerge(I) obs: 0.138 |
反射 | *PLUS Num. measured all: 108430 |
-
解析
ソフトウェア |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
精密化 | 解像度: 3→12 Å / σ(F): 3 詳細: RESIDUES 142 - 145 IN CHAINS D AND J ARE NOT TIED DOWN. LOOP 140-150 IN PROTOMER J (NO CALCIUM) IS LOOSELY ASSOCIATED WITH MAIN BODY OF PROTEIN. IT FORMS SYMMETRY CONTACT TO PROTOMER I WITH ...詳細: RESIDUES 142 - 145 IN CHAINS D AND J ARE NOT TIED DOWN. LOOP 140-150 IN PROTOMER J (NO CALCIUM) IS LOOSELY ASSOCIATED WITH MAIN BODY OF PROTEIN. IT FORMS SYMMETRY CONTACT TO PROTOMER I WITH GLU 147 J CHELATING TO CALCIUM IONS IN PROTOMER I. LOOP 140-150 IN PROTOMER D (NO CALCIUM) IS LOOSELY ASSOCIATED WITH MAIN BODY OF PROTEIN. IT FORMS SYMMETRY CONTACT TO PROTOMER C WITH GLU 147 D CHELATING TO CALCIUM IONS IN PROTOMER C. THE UNCERTAINTY IN RESIDUES 142 - 145 IN CHAINS D AND J RESULTS IN 2.4 A CLOSE NON-BONDED CONTACTS D 142 - D 143 AND J 142 - J 143. RESIDUE LEU 43 IN CHAINS D AND J FALLS IN A GENEROUSLY ALLOWED POSITION ON THE RAMACHANDRAN PLOT. THIS MINOR UNCERTAINTY IN THIS REGION IN PROTOMERS D AND J RESULTS IN TWO 2.6 A NON-BONDED CONTACTS IN EACH PROTOMER (D 42 - D 43, D 44 - D 45 , J 42 - J 43, J 44 - J 45).
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
原子変位パラメータ | Biso mean: 25.8 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
精密化ステップ | サイクル: LAST / 解像度: 3→12 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
拘束条件 |
|