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Open data
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Basic information
Entry | Database: PDB / ID: 1.0E+57 | ||||||
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Title | PHYSALIS MOTTLE VIRUS: EMPTY CAPSID | ||||||
![]() | PHYSALIS MOTTLE VIRUS | ||||||
![]() | VIRUS / COAT PROTEIN (VIRAL) / ICOSAHEDRAL VIRUS | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Krishna, S.S. / Sastri, M. / Savithri, H.S. / Murthy, M.R.N. | ||||||
![]() | ![]() Title: Structural Studies on the Empty Capsids of Physalis Mottle Virus Authors: Krishna, S.S. / Sastri, M. / Savithri, H.S. / Murthy, M.R.N. #1: ![]() Title: Three Dimensional Structure of Physalis Movirus: Implications for the Viral Assembly Authors: Krishna, S.S. / Hiremath, C.N. / Munshi, S.K. / Prahadeeswaran, D. / Sastri, M. / Savithri, H.S. / Murthy, M.R.N. #2: Journal: J.Mol.Biol. / Year: 1999 Title: Identification of a Discrete Intermediate in the Assembly/Disassembly of Physalis Mottle Tymovirus Through Mutational Analysis Authors: Sastri, M. / Reddy, S. / Krishna, S.S. / Murthy, M.R.N. / Savithri, H.S. #3: Journal: J.Mol.Biol. / Year: 1997 Title: Assembly of Physalis Mottle Virus Capsid Protein in Escherichia Coli and the Role of Amino and Carboxy Termini in the Formation of the Icosahedral Particles Authors: Sastri, M. / Kekuda, R. / Gopinath, K. / Kumar, C.T.R. / Jagath, J.R. / Savithri, H.S. #4: Journal: Virology / Year: 1993 Title: Architecture of Physalis Mottle Tymovirus as Probed by Monoclonal Antibodies and Cross-Linking Studies Authors: Kekuda, R. / Karande, A.A. / Jacob, A.N.K. / Savithri, H.S. #5: ![]() Title: Structure of Belladonna Mottle Virus: Cross-Rotation Function Studies with Southern Bean Mosaic Virus Authors: Hiremath, C.N. / Munshi, S.K. / Murthy, M.R.N. #6: Journal: J.Biol.Chem. / Year: 1989 Title: Primary Structure of Belladonna Mottle Virus Coat Protein Authors: Suryanarayana, S. / Rao, N.A. / Murthy, M.R.N. / Savithri, H.S. #7: ![]() Title: Stability of Belladonna Mottle Virus Particles: The Role of Polyamines and Calcium Authors: Savithri, H.S. / Munshi, S.K. / Suryanarayana, S. / Divakar, S. / Murthy, M.R.N. #8: ![]() Title: Symmetry of Belladonna Mottle Virus: Rotation Function Studies Authors: Munshi, S.K. / Hiremath, C.N. / Murthy, M.R.N. / Savithri, H.S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 95.2 KB | Display | ![]() |
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PDB format | ![]() | 70.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 407.3 KB | Display | ![]() |
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Full document | ![]() | 448.4 KB | Display | |
Data in XML | ![]() | 17.7 KB | Display | |
Data in CIF | ![]() | 24.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1qjzS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 |
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3 | ![]()
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4 | ![]()
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5 | ![]()
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6 | ![]()
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Unit cell |
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Symmetry | Point symmetry: (Schoenflies symbol: I (icosahedral)) |
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Components
#1: Protein | Mass: 19989.924 Da / Num. of mol.: 3 / Fragment: EMPTY CAPSID Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | pH: 5.6 Details: PH 5.6 SODIUM ACETATE; WITH 20% PEG AS PRECIPITANT. | ||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Method: unknown | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 295 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Details: MIRRORS |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 3.2→30 Å / Num. obs: 605968 / % possible obs: 36 % / Observed criterion σ(I): 2 / Rmerge(I) obs: 0.149 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1QJZ Resolution: 3.2→10 Å / Data cutoff high absF: 10000000 / σ(F): 4
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Refinement step | Cycle: LAST / Resolution: 3.2→10 Å
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Refine LS restraints |
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Refine LS restraints NCS | NCS model details: STRICT | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: CNS / Version: 0.4 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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