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- PDB-1cvo: THE SOLUTION STRUCTURE OF CARDIOTOXIN V FROM NAJA NAJA ATRA -

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Entry
Database: PDB / ID: 1cvo
TitleTHE SOLUTION STRUCTURE OF CARDIOTOXIN V FROM NAJA NAJA ATRA
ComponentsCARDIOTOXIN V
KeywordsCYTOTOXIN
Function / homology
Function and homology information


other organism cell membrane / toxin activity / extracellular region / membrane
Similarity search - Function
Snake cytotoxin, cobra-type / Snake toxin, conserved site / Snake toxins signature. / : / Snake toxin cobra-type / Snake three-finger toxin / CD59 / CD59 / Snake toxin-like superfamily / Ribbon / Mainly Beta
Similarity search - Domain/homology
Biological speciesNaja atra (Chinese cobra)
MethodSOLUTION NMR
AuthorsSinghal, A.K. / Chien, K.-Y. / Wu, W.-G. / Rule, G.S.
Citation
Journal: Biochemistry / Year: 1993
Title: Solution structure of cardiotoxin V from Naja naja atra.
Authors: Singhal, A.K. / Chien, K.Y. / Wu, W.G. / Rule, G.S.
#1: Journal: J.Biol.Chem. / Year: 1991
Title: Fusion of Sphingomyelin Vesicles Induced by Proteins from Taiwan Cobra (Naja Naja Atra) Venom
Authors: Chien, K.-Y. / Huang, W.-N. / Jean, J.-H. / Wu, W.-G.
History
DepositionApr 28, 1993Processing site: BNL
Revision 1.0Jan 31, 1994Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Nov 29, 2017Group: Derived calculations / Other
Category: pdbx_database_status / pdbx_struct_assembly ...pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list / struct_conf
Item: _pdbx_database_status.process_site
Revision 1.4Nov 13, 2024Group: Data collection / Database references / Structure summary
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: CARDIOTOXIN V


Theoretical massNumber of molelcules
Total (without water)7,0271
Polymers7,0271
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_5551
Atom site foot note1: LEU 8 - PRO 9 MODEL 1 OMEGA =266.37 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
2: LEU 8 - PRO 9 MODEL 2 OMEGA =267.32 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
3: CYS 15 - PRO 16 MODEL 2 OMEGA =244.36 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)2 / -
Representative

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Components

#1: Protein CARDIOTOXIN V


Mass: 7027.456 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Naja atra (Chinese cobra) / References: UniProt: P62375
Has protein modificationY

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Processing

NMR softwareName: DSPACE / Developer: HARE RESEARCH INC. / Classification: refinement
NMR ensembleConformers submitted total number: 2

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